Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC16.39■□□□□ 0.21
HMGB3O15347 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HMGB3O15347 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HMGB3O15347 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC16.39■□□□□ 0.21
HMGB3O15347 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HMGB3O15347 AC133637.1-201ENST00000624115 1537 ntBASIC16.39■□□□□ 0.21
HMGB3O15347 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HMGB3O15347 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
HMGB3O15347 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC16.39■□□□□ 0.21
HMGB3O15347 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
HMGB3O15347 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC16.39■□□□□ 0.21
HMGB3O15347 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC16.39■□□□□ 0.21
HMGB3O15347 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
HMGB3O15347 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
HMGB3O15347 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
HMGB3O15347 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HMGB3O15347 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
HMGB3O15347 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
HMGB3O15347 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
HMGB3O15347 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC16.38■□□□□ 0.21
HMGB3O15347 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC16.38■□□□□ 0.21
HMGB3O15347 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC16.38■□□□□ 0.21
HMGB3O15347 AL031848.2-201ENST00000607670 837 ntBASIC16.38■□□□□ 0.21
HMGB3O15347 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
HMGB3O15347 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
HMGB3O15347 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
HMGB3O15347 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
HMGB3O15347 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC16.38■□□□□ 0.21
HMGB3O15347 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HMGB3O15347 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
HMGB3O15347 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC16.38■□□□□ 0.21
HMGB3O15347 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
HMGB3O15347 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HMGB3O15347 AC120498.9-201ENST00000339021 3867 ntBASIC16.38■□□□□ 0.21
HMGB3O15347 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC16.38■□□□□ 0.21
HMGB3O15347 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HMGB3O15347 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HMGB3O15347 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
HMGB3O15347 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HMGB3O15347 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HMGB3O15347 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
HMGB3O15347 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC16.37■□□□□ 0.21
HMGB3O15347 FER1L4-210ENST00000615531 5998 ntBASIC16.37■□□□□ 0.21
HMGB3O15347 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
HMGB3O15347 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC16.37■□□□□ 0.21
HMGB3O15347 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
HMGB3O15347 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC16.37■□□□□ 0.21
HMGB3O15347 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HMGB3O15347 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
HMGB3O15347 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC16.37■□□□□ 0.21
HMGB3O15347 USP39-204ENST00000409766 2033 ntTSL 2 BASIC16.37■□□□□ 0.21
HMGB3O15347 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC16.37■□□□□ 0.21
HMGB3O15347 CD72-202ENST00000378430 585 ntTSL 3 BASIC16.37■□□□□ 0.21
HMGB3O15347 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
HMGB3O15347 DET1-207ENST00000564406 2315 ntTSL 2 BASIC16.37■□□□□ 0.21
HMGB3O15347 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
HMGB3O15347 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HMGB3O15347 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
HMGB3O15347 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC16.37■□□□□ 0.21
HMGB3O15347 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HMGB3O15347 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
HMGB3O15347 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HMGB3O15347 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
HMGB3O15347 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HMGB3O15347 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HMGB3O15347 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HMGB3O15347 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HMGB3O15347 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC16.36■□□□□ 0.21
HMGB3O15347 AL512408.1-201ENST00000569378 2000 ntBASIC16.36■□□□□ 0.21
HMGB3O15347 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
HMGB3O15347 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
HMGB3O15347 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
HMGB3O15347 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HMGB3O15347 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HMGB3O15347 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HMGB3O15347 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC16.36■□□□□ 0.21
HMGB3O15347 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC16.36■□□□□ 0.21
HMGB3O15347 BX664725.1-201ENST00000438252 379 ntBASIC16.36■□□□□ 0.21
HMGB3O15347 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HMGB3O15347 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HMGB3O15347 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC16.36■□□□□ 0.21
HMGB3O15347 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC16.36■□□□□ 0.21
HMGB3O15347 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HMGB3O15347 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HMGB3O15347 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
HMGB3O15347 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HMGB3O15347 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HMGB3O15347 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC16.36■□□□□ 0.21
HMGB3O15347 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HMGB3O15347 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC16.36■□□□□ 0.21
HMGB3O15347 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HMGB3O15347 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HMGB3O15347 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
HMGB3O15347 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB3O15347 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB3O15347 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB3O15347 GTSE1-AS1-202ENST00000623117 1518 ntBASIC16.35■□□□□ 0.21
HMGB3O15347 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB3O15347 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB3O15347 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC16.35■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms