Protein–RNA interactions for Protein: Q9UM47

NOTCH3, Neurogenic locus notch homolog protein 3, humanhuman

Predictions only

Length 2,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3Q9UM47 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
NOTCH3Q9UM47 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
NOTCH3Q9UM47 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
NOTCH3Q9UM47 AC080038.3-201ENST00000623346 1952 ntBASIC15.7■□□□□ 0.1
NOTCH3Q9UM47 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
NOTCH3Q9UM47 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC15.7■□□□□ 0.1
NOTCH3Q9UM47 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC15.7■□□□□ 0.1
NOTCH3Q9UM47 MTDHP1-201ENST00000605323 784 ntBASIC15.7■□□□□ 0.1
NOTCH3Q9UM47 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
NOTCH3Q9UM47 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
NOTCH3Q9UM47 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC15.7■□□□□ 0.1
NOTCH3Q9UM47 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
NOTCH3Q9UM47 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
NOTCH3Q9UM47 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC15.7■□□□□ 0.1
NOTCH3Q9UM47 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC15.7■□□□□ 0.1
NOTCH3Q9UM47 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC15.7■□□□□ 0.1
NOTCH3Q9UM47 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
NOTCH3Q9UM47 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
NOTCH3Q9UM47 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
NOTCH3Q9UM47 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
NOTCH3Q9UM47 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
NOTCH3Q9UM47 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
NOTCH3Q9UM47 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
NOTCH3Q9UM47 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
NOTCH3Q9UM47 KRT18P68-201ENST00000392293 1000 ntBASIC15.69■□□□□ 0.1
NOTCH3Q9UM47 KRT17P3-201ENST00000420566 1262 ntBASIC15.69■□□□□ 0.1
NOTCH3Q9UM47 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
NOTCH3Q9UM47 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC15.69■□□□□ 0.1
NOTCH3Q9UM47 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC15.69■□□□□ 0.1
NOTCH3Q9UM47 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
NOTCH3Q9UM47 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
NOTCH3Q9UM47 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC15.69■□□□□ 0.1
NOTCH3Q9UM47 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
NOTCH3Q9UM47 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC15.69■□□□□ 0.1
NOTCH3Q9UM47 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
NOTCH3Q9UM47 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
NOTCH3Q9UM47 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
NOTCH3Q9UM47 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
NOTCH3Q9UM47 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC15.69■□□□□ 0.1
NOTCH3Q9UM47 SLC29A4P2-201ENST00000504749 1089 ntBASIC15.69■□□□□ 0.1
NOTCH3Q9UM47 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC15.69■□□□□ 0.1
NOTCH3Q9UM47 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
NOTCH3Q9UM47 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC15.69■□□□□ 0.1
NOTCH3Q9UM47 AC092053.2-201ENST00000640557 1818 ntBASIC15.68■□□□□ 0.1
NOTCH3Q9UM47 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
NOTCH3Q9UM47 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
NOTCH3Q9UM47 NME6-213ENST00000451657 871 ntTSL 2 BASIC15.68■□□□□ 0.1
NOTCH3Q9UM47 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
NOTCH3Q9UM47 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
NOTCH3Q9UM47 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
NOTCH3Q9UM47 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
NOTCH3Q9UM47 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
NOTCH3Q9UM47 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
NOTCH3Q9UM47 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.1
NOTCH3Q9UM47 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
NOTCH3Q9UM47 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
NOTCH3Q9UM47 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC15.68■□□□□ 0.1
NOTCH3Q9UM47 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
NOTCH3Q9UM47 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
NOTCH3Q9UM47 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
NOTCH3Q9UM47 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
NOTCH3Q9UM47 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
NOTCH3Q9UM47 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
NOTCH3Q9UM47 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC15.68■□□□□ 0.1
NOTCH3Q9UM47 LINC01023-201ENST00000606054 436 ntBASIC15.68■□□□□ 0.1
NOTCH3Q9UM47 HLA-B-256ENST00000639848 1089 ntBASIC15.68■□□□□ 0.1
NOTCH3Q9UM47 AL049637.2-201ENST00000641778 930 ntBASIC15.68■□□□□ 0.1
NOTCH3Q9UM47 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC15.68■□□□□ 0.1
NOTCH3Q9UM47 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC15.68■□□□□ 0.1
NOTCH3Q9UM47 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
NOTCH3Q9UM47 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
NOTCH3Q9UM47 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
NOTCH3Q9UM47 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC15.68■□□□□ 0.1
NOTCH3Q9UM47 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
NOTCH3Q9UM47 AC233723.2-201ENST00000623798 2106 ntBASIC15.68■□□□□ 0.1
NOTCH3Q9UM47 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
NOTCH3Q9UM47 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
NOTCH3Q9UM47 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
NOTCH3Q9UM47 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
NOTCH3Q9UM47 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
NOTCH3Q9UM47 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
NOTCH3Q9UM47 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
NOTCH3Q9UM47 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
NOTCH3Q9UM47 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC15.67■□□□□ 0.1
NOTCH3Q9UM47 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
NOTCH3Q9UM47 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC15.67■□□□□ 0.1
NOTCH3Q9UM47 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
NOTCH3Q9UM47 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC15.67■□□□□ 0.1
NOTCH3Q9UM47 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
NOTCH3Q9UM47 BX088651.1-201ENST00000540551 451 ntBASIC15.67■□□□□ 0.1
NOTCH3Q9UM47 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
NOTCH3Q9UM47 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
NOTCH3Q9UM47 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
NOTCH3Q9UM47 REXO1L12P-201ENST00000622156 912 ntBASIC15.67■□□□□ 0.1
NOTCH3Q9UM47 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
NOTCH3Q9UM47 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC15.67■□□□□ 0.1
NOTCH3Q9UM47 STK25-234ENST00000535007 2459 ntTSL 2 BASIC15.67■□□□□ 0.1
NOTCH3Q9UM47 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
NOTCH3Q9UM47 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
NOTCH3Q9UM47 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC15.67■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms