Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC18.21■□□□□ 0.51
VSX1Q9NZR4 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC18.21■□□□□ 0.51
VSX1Q9NZR4 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
VSX1Q9NZR4 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
VSX1Q9NZR4 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC18.21■□□□□ 0.51
VSX1Q9NZR4 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VSX1Q9NZR4 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VSX1Q9NZR4 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
VSX1Q9NZR4 AL512408.1-201ENST00000569378 2000 ntBASIC18.21■□□□□ 0.51
VSX1Q9NZR4 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
VSX1Q9NZR4 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
VSX1Q9NZR4 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC18.21■□□□□ 0.51
VSX1Q9NZR4 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
VSX1Q9NZR4 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
VSX1Q9NZR4 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC18.21■□□□□ 0.51
VSX1Q9NZR4 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
VSX1Q9NZR4 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC18.21■□□□□ 0.51
VSX1Q9NZR4 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
VSX1Q9NZR4 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
VSX1Q9NZR4 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VSX1Q9NZR4 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC18.2■□□□□ 0.5
VSX1Q9NZR4 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC18.2■□□□□ 0.5
VSX1Q9NZR4 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
VSX1Q9NZR4 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
VSX1Q9NZR4 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC18.2■□□□□ 0.5
VSX1Q9NZR4 AC007322.3-201ENST00000426526 701 ntBASIC18.2■□□□□ 0.5
VSX1Q9NZR4 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC18.2■□□□□ 0.5
VSX1Q9NZR4 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC18.2■□□□□ 0.5
VSX1Q9NZR4 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
VSX1Q9NZR4 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC18.2■□□□□ 0.5
VSX1Q9NZR4 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
VSX1Q9NZR4 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
VSX1Q9NZR4 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
VSX1Q9NZR4 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC18.2■□□□□ 0.5
VSX1Q9NZR4 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VSX1Q9NZR4 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
VSX1Q9NZR4 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
VSX1Q9NZR4 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VSX1Q9NZR4 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VSX1Q9NZR4 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
VSX1Q9NZR4 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
VSX1Q9NZR4 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
VSX1Q9NZR4 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VSX1Q9NZR4 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
VSX1Q9NZR4 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VSX1Q9NZR4 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VSX1Q9NZR4 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC18.19■□□□□ 0.5
VSX1Q9NZR4 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
VSX1Q9NZR4 SAPCD2P1-201ENST00000395413 1184 ntBASIC18.19■□□□□ 0.5
VSX1Q9NZR4 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC18.19■□□□□ 0.5
VSX1Q9NZR4 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC18.19■□□□□ 0.5
VSX1Q9NZR4 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC18.19■□□□□ 0.5
VSX1Q9NZR4 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC18.19■□□□□ 0.5
VSX1Q9NZR4 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC18.19■□□□□ 0.5
VSX1Q9NZR4 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC18.19■□□□□ 0.5
VSX1Q9NZR4 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC18.19■□□□□ 0.5
VSX1Q9NZR4 UBE2DNL-204ENST00000602536 740 ntBASIC18.19■□□□□ 0.5
VSX1Q9NZR4 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
VSX1Q9NZR4 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VSX1Q9NZR4 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
VSX1Q9NZR4 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VSX1Q9NZR4 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VSX1Q9NZR4 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
VSX1Q9NZR4 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
VSX1Q9NZR4 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
VSX1Q9NZR4 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VSX1Q9NZR4 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
VSX1Q9NZR4 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
VSX1Q9NZR4 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VSX1Q9NZR4 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC18.18■□□□□ 0.5
VSX1Q9NZR4 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
VSX1Q9NZR4 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
VSX1Q9NZR4 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
VSX1Q9NZR4 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
VSX1Q9NZR4 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
VSX1Q9NZR4 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
VSX1Q9NZR4 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
VSX1Q9NZR4 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
VSX1Q9NZR4 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
VSX1Q9NZR4 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VSX1Q9NZR4 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VSX1Q9NZR4 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VSX1Q9NZR4 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
VSX1Q9NZR4 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC18.18■□□□□ 0.5
VSX1Q9NZR4 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
VSX1Q9NZR4 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC18.18■□□□□ 0.5
VSX1Q9NZR4 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
VSX1Q9NZR4 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
VSX1Q9NZR4 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
VSX1Q9NZR4 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
VSX1Q9NZR4 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC18.17■□□□□ 0.5
VSX1Q9NZR4 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VSX1Q9NZR4 AC097381.1-201ENST00000429019 1296 ntBASIC18.17■□□□□ 0.5
VSX1Q9NZR4 AC034268.1-201ENST00000441047 882 ntBASIC18.17■□□□□ 0.5
VSX1Q9NZR4 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VSX1Q9NZR4 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC18.17■□□□□ 0.5
VSX1Q9NZR4 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
VSX1Q9NZR4 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
VSX1Q9NZR4 MYCNOS-205ENST00000641950 531 ntBASIC18.17■□□□□ 0.5
VSX1Q9NZR4 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC18.17■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms