Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
USB1Q9BQ65 AC010980.2-201ENST00000587099 1412 ntBASIC18.14■□□□□ 0.49
USB1Q9BQ65 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
USB1Q9BQ65 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
USB1Q9BQ65 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
USB1Q9BQ65 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC18.13■□□□□ 0.49
USB1Q9BQ65 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
USB1Q9BQ65 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
USB1Q9BQ65 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC18.13■□□□□ 0.49
USB1Q9BQ65 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
USB1Q9BQ65 AC007322.3-201ENST00000426526 701 ntBASIC18.13■□□□□ 0.49
USB1Q9BQ65 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
USB1Q9BQ65 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
USB1Q9BQ65 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
USB1Q9BQ65 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
USB1Q9BQ65 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
USB1Q9BQ65 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
USB1Q9BQ65 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
USB1Q9BQ65 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC18.13■□□□□ 0.49
USB1Q9BQ65 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
USB1Q9BQ65 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC18.12■□□□□ 0.49
USB1Q9BQ65 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
USB1Q9BQ65 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
USB1Q9BQ65 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
USB1Q9BQ65 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
USB1Q9BQ65 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC18.12■□□□□ 0.49
USB1Q9BQ65 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC18.12■□□□□ 0.49
USB1Q9BQ65 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
USB1Q9BQ65 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
USB1Q9BQ65 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
USB1Q9BQ65 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
USB1Q9BQ65 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
USB1Q9BQ65 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
USB1Q9BQ65 APTR-205ENST00000447009 902 ntTSL 2 BASIC18.12■□□□□ 0.49
USB1Q9BQ65 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC18.12■□□□□ 0.49
USB1Q9BQ65 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
USB1Q9BQ65 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC18.12■□□□□ 0.49
USB1Q9BQ65 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC18.12■□□□□ 0.49
USB1Q9BQ65 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
USB1Q9BQ65 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
USB1Q9BQ65 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
USB1Q9BQ65 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
USB1Q9BQ65 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
USB1Q9BQ65 MFF-203ENST00000349901 1716 ntTSL 2 BASIC18.12■□□□□ 0.49
USB1Q9BQ65 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC18.12■□□□□ 0.49
USB1Q9BQ65 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
USB1Q9BQ65 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
USB1Q9BQ65 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
USB1Q9BQ65 AC026310.3-201ENST00000625186 2373 ntBASIC18.11■□□□□ 0.49
USB1Q9BQ65 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC18.11■□□□□ 0.49
USB1Q9BQ65 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC18.11■□□□□ 0.49
USB1Q9BQ65 PTPA-214ENST00000423100 988 ntTSL 2 BASIC18.11■□□□□ 0.49
USB1Q9BQ65 PPP1R14BP2-201ENST00000426284 444 ntBASIC18.11■□□□□ 0.49
USB1Q9BQ65 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC18.11■□□□□ 0.49
USB1Q9BQ65 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC18.11■□□□□ 0.49
USB1Q9BQ65 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC18.11■□□□□ 0.49
USB1Q9BQ65 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC18.11■□□□□ 0.49
USB1Q9BQ65 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
USB1Q9BQ65 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
USB1Q9BQ65 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
USB1Q9BQ65 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
USB1Q9BQ65 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
USB1Q9BQ65 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC18.1■□□□□ 0.49
USB1Q9BQ65 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
USB1Q9BQ65 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
USB1Q9BQ65 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
USB1Q9BQ65 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC18.1■□□□□ 0.49
USB1Q9BQ65 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
USB1Q9BQ65 TUB-203ENST00000534099 1759 ntTSL 2 BASIC18.1■□□□□ 0.49
USB1Q9BQ65 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
USB1Q9BQ65 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
USB1Q9BQ65 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
USB1Q9BQ65 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
USB1Q9BQ65 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
USB1Q9BQ65 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
USB1Q9BQ65 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC18.1■□□□□ 0.49
USB1Q9BQ65 BX276092.2-201ENST00000417668 665 ntBASIC18.1■□□□□ 0.49
USB1Q9BQ65 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
USB1Q9BQ65 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC18.1■□□□□ 0.49
USB1Q9BQ65 AC097658.1-201ENST00000475555 843 ntBASIC18.1■□□□□ 0.49
USB1Q9BQ65 CD99P1-205ENST00000527459 561 ntBASIC18.1■□□□□ 0.49
USB1Q9BQ65 KRT18P6-201ENST00000555540 1265 ntBASIC18.1■□□□□ 0.49
USB1Q9BQ65 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
USB1Q9BQ65 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC18.1■□□□□ 0.49
USB1Q9BQ65 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
USB1Q9BQ65 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
USB1Q9BQ65 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
USB1Q9BQ65 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC18.1■□□□□ 0.49
USB1Q9BQ65 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
USB1Q9BQ65 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
USB1Q9BQ65 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
USB1Q9BQ65 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
USB1Q9BQ65 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
USB1Q9BQ65 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
USB1Q9BQ65 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC18.09■□□□□ 0.49
USB1Q9BQ65 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
USB1Q9BQ65 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
USB1Q9BQ65 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
USB1Q9BQ65 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
USB1Q9BQ65 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms