Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CFAP54Q96N23 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC20.18■□□□□ 0.82
CFAP54Q96N23 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CFAP54Q96N23 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CFAP54Q96N23 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CFAP54Q96N23 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC20.18■□□□□ 0.82
CFAP54Q96N23 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CFAP54Q96N23 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CFAP54Q96N23 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CFAP54Q96N23 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC20.18■□□□□ 0.82
CFAP54Q96N23 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CFAP54Q96N23 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC20.18■□□□□ 0.82
CFAP54Q96N23 LGALS8-AS1-201ENST00000487567 1457 ntBASIC20.18■□□□□ 0.82
CFAP54Q96N23 KRT8P10-201ENST00000450021 1447 ntBASIC20.17■□□□□ 0.82
CFAP54Q96N23 LINC00526-201ENST00000581067 1875 ntBASIC20.17■□□□□ 0.82
CFAP54Q96N23 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC20.17■□□□□ 0.82
CFAP54Q96N23 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC20.17■□□□□ 0.82
CFAP54Q96N23 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CFAP54Q96N23 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CFAP54Q96N23 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
CFAP54Q96N23 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CFAP54Q96N23 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CFAP54Q96N23 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC20.17■□□□□ 0.82
CFAP54Q96N23 FAM8A6P-201ENST00000407496 1135 ntBASIC20.17■□□□□ 0.82
CFAP54Q96N23 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC20.17■□□□□ 0.82
CFAP54Q96N23 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CFAP54Q96N23 AC008175.2-201ENST00000612840 297 ntBASIC20.17■□□□□ 0.82
CFAP54Q96N23 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CFAP54Q96N23 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC20.17■□□□□ 0.82
CFAP54Q96N23 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CFAP54Q96N23 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CFAP54Q96N23 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC20.16■□□□□ 0.82
CFAP54Q96N23 AL691432.3-201ENST00000621860 400 ntBASIC20.16■□□□□ 0.82
CFAP54Q96N23 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CFAP54Q96N23 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC20.16■□□□□ 0.82
CFAP54Q96N23 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC20.16■□□□□ 0.82
CFAP54Q96N23 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC20.16■□□□□ 0.82
CFAP54Q96N23 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CFAP54Q96N23 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CFAP54Q96N23 AL353807.1-201ENST00000427475 662 ntBASIC20.16■□□□□ 0.82
CFAP54Q96N23 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC20.16■□□□□ 0.82
CFAP54Q96N23 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CFAP54Q96N23 AC026471.6-201ENST00000622954 1905 ntBASIC20.16■□□□□ 0.82
CFAP54Q96N23 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CFAP54Q96N23 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CFAP54Q96N23 COPE-203ENST00000351079 907 ntTSL 2 BASIC20.16■□□□□ 0.82
CFAP54Q96N23 KRT18P68-201ENST00000392293 1000 ntBASIC20.16■□□□□ 0.82
CFAP54Q96N23 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
CFAP54Q96N23 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC20.16■□□□□ 0.82
CFAP54Q96N23 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CFAP54Q96N23 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CFAP54Q96N23 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
CFAP54Q96N23 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
CFAP54Q96N23 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC20.15■□□□□ 0.82
CFAP54Q96N23 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC20.15■□□□□ 0.82
CFAP54Q96N23 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CFAP54Q96N23 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CFAP54Q96N23 FITM1-202ENST00000559294 800 ntBASIC20.15■□□□□ 0.82
CFAP54Q96N23 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CFAP54Q96N23 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CFAP54Q96N23 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC20.15■□□□□ 0.82
CFAP54Q96N23 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC20.15■□□□□ 0.82
CFAP54Q96N23 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC20.15■□□□□ 0.82
CFAP54Q96N23 AC005829.2-201ENST00000571422 1056 ntBASIC20.15■□□□□ 0.82
CFAP54Q96N23 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC20.15■□□□□ 0.82
CFAP54Q96N23 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
CFAP54Q96N23 CALM1-205ENST00000553542 877 ntTSL 5 BASIC20.14■□□□□ 0.82
CFAP54Q96N23 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
CFAP54Q96N23 FAM21FP-204ENST00000608637 956 ntBASIC20.14■□□□□ 0.82
CFAP54Q96N23 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
CFAP54Q96N23 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC20.14■□□□□ 0.81
CFAP54Q96N23 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CFAP54Q96N23 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CFAP54Q96N23 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
CFAP54Q96N23 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CFAP54Q96N23 FDX1P1-201ENST00000449115 551 ntBASIC20.14■□□□□ 0.81
CFAP54Q96N23 ECEL1P2-202ENST00000465689 757 ntBASIC20.14■□□□□ 0.81
CFAP54Q96N23 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC20.14■□□□□ 0.81
CFAP54Q96N23 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC20.14■□□□□ 0.81
CFAP54Q96N23 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC20.14■□□□□ 0.81
CFAP54Q96N23 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CFAP54Q96N23 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
CFAP54Q96N23 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CFAP54Q96N23 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CFAP54Q96N23 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
CFAP54Q96N23 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC20.13■□□□□ 0.81
CFAP54Q96N23 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
CFAP54Q96N23 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
CFAP54Q96N23 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
CFAP54Q96N23 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC20.13■□□□□ 0.81
CFAP54Q96N23 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC20.13■□□□□ 0.81
CFAP54Q96N23 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CFAP54Q96N23 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CFAP54Q96N23 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
CFAP54Q96N23 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CFAP54Q96N23 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC20.13■□□□□ 0.81
CFAP54Q96N23 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC20.13■□□□□ 0.81
CFAP54Q96N23 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
CFAP54Q96N23 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC20.13■□□□□ 0.81
CFAP54Q96N23 BET1L-202ENST00000332865 533 ntTSL 5 BASIC20.13■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms