Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TTC28Q96AY4 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
TTC28Q96AY4 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC21.02■□□□□ 0.96
TTC28Q96AY4 AC009078.2-202ENST00000463353 338 ntBASIC21.02■□□□□ 0.96
TTC28Q96AY4 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC21.02■□□□□ 0.96
TTC28Q96AY4 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC21.02■□□□□ 0.96
TTC28Q96AY4 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC21.02■□□□□ 0.96
TTC28Q96AY4 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
TTC28Q96AY4 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TTC28Q96AY4 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TTC28Q96AY4 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TTC28Q96AY4 IER3-202ENST00000376377 1350 ntBASIC21.02■□□□□ 0.96
TTC28Q96AY4 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC21.02■□□□□ 0.96
TTC28Q96AY4 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TTC28Q96AY4 AC111152.3-201ENST00000569699 673 ntBASIC21.02■□□□□ 0.96
TTC28Q96AY4 AC008622.2-201ENST00000617006 1229 ntBASIC21.02■□□□□ 0.96
TTC28Q96AY4 AC011558.1-201ENST00000623459 338 ntBASIC21.02■□□□□ 0.96
TTC28Q96AY4 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC21.02■□□□□ 0.95
TTC28Q96AY4 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC21.01■□□□□ 0.95
TTC28Q96AY4 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC21.01■□□□□ 0.95
TTC28Q96AY4 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TTC28Q96AY4 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC21.01■□□□□ 0.95
TTC28Q96AY4 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
TTC28Q96AY4 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC21.01■□□□□ 0.95
TTC28Q96AY4 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
TTC28Q96AY4 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TTC28Q96AY4 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
TTC28Q96AY4 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TTC28Q96AY4 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
TTC28Q96AY4 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC21.01■□□□□ 0.95
TTC28Q96AY4 AL671277.2-201ENST00000458060 996 ntBASIC21.01■□□□□ 0.95
TTC28Q96AY4 AC004264.1-201ENST00000608354 794 ntBASIC21.01■□□□□ 0.95
TTC28Q96AY4 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
TTC28Q96AY4 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TTC28Q96AY4 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TTC28Q96AY4 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC21.01■□□□□ 0.95
TTC28Q96AY4 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TTC28Q96AY4 PRR31-201ENST00000371629 978 ntTSL 2 BASIC21.01■□□□□ 0.95
TTC28Q96AY4 AL022342.1-201ENST00000400363 863 ntBASIC21.01■□□□□ 0.95
TTC28Q96AY4 TSPY5P-201ENST00000426936 936 ntBASIC21.01■□□□□ 0.95
TTC28Q96AY4 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC21.01■□□□□ 0.95
TTC28Q96AY4 CKBP1-201ENST00000565489 1086 ntBASIC21.01■□□□□ 0.95
TTC28Q96AY4 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
TTC28Q96AY4 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TTC28Q96AY4 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
TTC28Q96AY4 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC21■□□□□ 0.95
TTC28Q96AY4 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
TTC28Q96AY4 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC21■□□□□ 0.95
TTC28Q96AY4 EGLN1P1-201ENST00000531623 762 ntBASIC21■□□□□ 0.95
TTC28Q96AY4 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
TTC28Q96AY4 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC21■□□□□ 0.95
TTC28Q96AY4 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TTC28Q96AY4 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
TTC28Q96AY4 AC005332.1-201ENST00000577698 1310 ntBASIC21■□□□□ 0.95
TTC28Q96AY4 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TTC28Q96AY4 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TTC28Q96AY4 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC21■□□□□ 0.95
TTC28Q96AY4 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC21■□□□□ 0.95
TTC28Q96AY4 AC130371.2-201ENST00000619443 611 ntBASIC21■□□□□ 0.95
TTC28Q96AY4 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC21■□□□□ 0.95
TTC28Q96AY4 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
TTC28Q96AY4 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC20.99■□□□□ 0.95
TTC28Q96AY4 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TTC28Q96AY4 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC20.99■□□□□ 0.95
TTC28Q96AY4 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TTC28Q96AY4 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC20.99■□□□□ 0.95
TTC28Q96AY4 KSR1P1-201ENST00000446298 240 ntBASIC20.99■□□□□ 0.95
TTC28Q96AY4 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
TTC28Q96AY4 AL139125.2-201ENST00000623134 1869 ntBASIC20.99■□□□□ 0.95
TTC28Q96AY4 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
TTC28Q96AY4 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC20.99■□□□□ 0.95
TTC28Q96AY4 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC20.99■□□□□ 0.95
TTC28Q96AY4 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC20.99■□□□□ 0.95
TTC28Q96AY4 AL121829.2-201ENST00000620908 328 ntBASIC20.99■□□□□ 0.95
TTC28Q96AY4 AC012313.10-201ENST00000623509 926 ntBASIC20.99■□□□□ 0.95
TTC28Q96AY4 AP003733.4-201ENST00000623785 1697 ntBASIC20.99■□□□□ 0.95
TTC28Q96AY4 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
TTC28Q96AY4 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
TTC28Q96AY4 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TTC28Q96AY4 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
TTC28Q96AY4 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TTC28Q96AY4 AC007322.3-201ENST00000426526 701 ntBASIC20.98■□□□□ 0.95
TTC28Q96AY4 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC20.98■□□□□ 0.95
TTC28Q96AY4 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
TTC28Q96AY4 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
TTC28Q96AY4 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC20.98■□□□□ 0.95
TTC28Q96AY4 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TTC28Q96AY4 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC20.98■□□□□ 0.95
TTC28Q96AY4 AL138966.2-201ENST00000621997 464 ntBASIC20.98■□□□□ 0.95
TTC28Q96AY4 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TTC28Q96AY4 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TTC28Q96AY4 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
TTC28Q96AY4 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
TTC28Q96AY4 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TTC28Q96AY4 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TTC28Q96AY4 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
TTC28Q96AY4 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC20.98■□□□□ 0.95
TTC28Q96AY4 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC20.98■□□□□ 0.95
TTC28Q96AY4 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TTC28Q96AY4 LINC02084-201ENST00000606069 1096 ntBASIC20.98■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms