Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLIP4Q8N3C7 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
CLIP4Q8N3C7 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CLIP4Q8N3C7 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
CLIP4Q8N3C7 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLIP4Q8N3C7 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
CLIP4Q8N3C7 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLIP4Q8N3C7 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CLIP4Q8N3C7 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CLIP4Q8N3C7 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC19.04■□□□□ 0.64
CLIP4Q8N3C7 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CLIP4Q8N3C7 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC19.04■□□□□ 0.64
CLIP4Q8N3C7 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CLIP4Q8N3C7 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CLIP4Q8N3C7 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
CLIP4Q8N3C7 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC19.04■□□□□ 0.64
CLIP4Q8N3C7 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC19.04■□□□□ 0.64
CLIP4Q8N3C7 AP001160.3-201ENST00000601484 763 ntBASIC19.04■□□□□ 0.64
CLIP4Q8N3C7 FP700111.2-201ENST00000619190 1892 ntBASIC19.04■□□□□ 0.64
CLIP4Q8N3C7 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC19.04■□□□□ 0.64
CLIP4Q8N3C7 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
CLIP4Q8N3C7 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC19.04■□□□□ 0.64
CLIP4Q8N3C7 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CLIP4Q8N3C7 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC19.04■□□□□ 0.64
CLIP4Q8N3C7 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC19.04■□□□□ 0.64
CLIP4Q8N3C7 AC027702.1-201ENST00000563810 1770 ntBASIC19.04■□□□□ 0.64
CLIP4Q8N3C7 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
CLIP4Q8N3C7 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
CLIP4Q8N3C7 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC19.03■□□□□ 0.64
CLIP4Q8N3C7 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CLIP4Q8N3C7 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
CLIP4Q8N3C7 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CLIP4Q8N3C7 KRT16P2-201ENST00000414673 1423 ntBASIC19.03■□□□□ 0.64
CLIP4Q8N3C7 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CLIP4Q8N3C7 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CLIP4Q8N3C7 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC19.03■□□□□ 0.64
CLIP4Q8N3C7 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CLIP4Q8N3C7 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
CLIP4Q8N3C7 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CLIP4Q8N3C7 KRT18P14-201ENST00000534205 1250 ntBASIC19.03■□□□□ 0.64
CLIP4Q8N3C7 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC19.03■□□□□ 0.64
CLIP4Q8N3C7 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC19.03■□□□□ 0.64
CLIP4Q8N3C7 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CLIP4Q8N3C7 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CLIP4Q8N3C7 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
CLIP4Q8N3C7 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC19.03■□□□□ 0.64
CLIP4Q8N3C7 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CLIP4Q8N3C7 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CLIP4Q8N3C7 GABARAPL3-202ENST00000624044 1851 ntBASIC19.03■□□□□ 0.64
CLIP4Q8N3C7 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CLIP4Q8N3C7 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CLIP4Q8N3C7 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC19.02■□□□□ 0.64
CLIP4Q8N3C7 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC19.02■□□□□ 0.64
CLIP4Q8N3C7 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CLIP4Q8N3C7 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CLIP4Q8N3C7 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CLIP4Q8N3C7 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CLIP4Q8N3C7 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
CLIP4Q8N3C7 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CLIP4Q8N3C7 COX20-201ENST00000366528 568 ntTSL 2 BASIC19.02■□□□□ 0.64
CLIP4Q8N3C7 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC19.02■□□□□ 0.64
CLIP4Q8N3C7 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC19.02■□□□□ 0.64
CLIP4Q8N3C7 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC19.02■□□□□ 0.64
CLIP4Q8N3C7 DUX4L2-201ENST00000561772 1275 ntBASIC19.02■□□□□ 0.64
CLIP4Q8N3C7 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC19.02■□□□□ 0.64
CLIP4Q8N3C7 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC19.02■□□□□ 0.64
CLIP4Q8N3C7 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC19.02■□□□□ 0.64
CLIP4Q8N3C7 DUX4L6-201ENST00000626483 1275 ntBASIC19.02■□□□□ 0.64
CLIP4Q8N3C7 DUX4L1-201ENST00000627662 1275 ntBASIC19.02■□□□□ 0.64
CLIP4Q8N3C7 DUX4L8-201ENST00000629013 1275 ntBASIC19.02■□□□□ 0.64
CLIP4Q8N3C7 DUX4L3-201ENST00000630187 1275 ntBASIC19.02■□□□□ 0.64
CLIP4Q8N3C7 DUX4L7-201ENST00000630678 1275 ntBASIC19.02■□□□□ 0.64
CLIP4Q8N3C7 DUX4L5-201ENST00000630834 1275 ntBASIC19.02■□□□□ 0.64
CLIP4Q8N3C7 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CLIP4Q8N3C7 BID-203ENST00000399765 1879 ntTSL 2 BASIC19.02■□□□□ 0.64
CLIP4Q8N3C7 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CLIP4Q8N3C7 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
CLIP4Q8N3C7 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CLIP4Q8N3C7 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.63
CLIP4Q8N3C7 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC19.02■□□□□ 0.63
CLIP4Q8N3C7 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC19.02■□□□□ 0.63
CLIP4Q8N3C7 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.63
CLIP4Q8N3C7 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC19.02■□□□□ 0.63
CLIP4Q8N3C7 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
CLIP4Q8N3C7 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CLIP4Q8N3C7 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC19.01■□□□□ 0.63
CLIP4Q8N3C7 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CLIP4Q8N3C7 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC19.01■□□□□ 0.63
CLIP4Q8N3C7 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CLIP4Q8N3C7 AC004854.2-201ENST00000608450 1441 ntBASIC19.01■□□□□ 0.63
CLIP4Q8N3C7 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC19.01■□□□□ 0.63
CLIP4Q8N3C7 AFG3L1P-217ENST00000557444 2447 ntBASIC19.01■□□□□ 0.63
CLIP4Q8N3C7 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC19.01■□□□□ 0.63
CLIP4Q8N3C7 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC19.01■□□□□ 0.63
CLIP4Q8N3C7 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CLIP4Q8N3C7 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
CLIP4Q8N3C7 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
CLIP4Q8N3C7 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CLIP4Q8N3C7 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
CLIP4Q8N3C7 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC19.01■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms