Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CTCFP49711 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
CTCFP49711 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC23.79■■□□□ 1.4
CTCFP49711 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC23.79■■□□□ 1.4
CTCFP49711 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CTCFP49711 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC23.79■■□□□ 1.4
CTCFP49711 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC23.79■■□□□ 1.4
CTCFP49711 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CTCFP49711 CLN6-204ENST00000564752 900 ntTSL 3 BASIC23.79■■□□□ 1.4
CTCFP49711 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC23.79■■□□□ 1.4
CTCFP49711 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CTCFP49711 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
CTCFP49711 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC23.79■■□□□ 1.4
CTCFP49711 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
CTCFP49711 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
CTCFP49711 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CTCFP49711 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CTCFP49711 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CTCFP49711 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CTCFP49711 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC23.78■■□□□ 1.4
CTCFP49711 COPS8-203ENST00000409334 794 ntTSL 5 BASIC23.78■■□□□ 1.4
CTCFP49711 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC23.78■■□□□ 1.4
CTCFP49711 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC23.78■■□□□ 1.4
CTCFP49711 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC23.78■■□□□ 1.4
CTCFP49711 CLN6-214ENST00000636314 442 ntTSL 3 BASIC23.78■■□□□ 1.4
CTCFP49711 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC23.78■■□□□ 1.4
CTCFP49711 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CTCFP49711 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CTCFP49711 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC23.78■■□□□ 1.4
CTCFP49711 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
CTCFP49711 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CTCFP49711 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
CTCFP49711 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CTCFP49711 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC23.77■■□□□ 1.4
CTCFP49711 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC23.77■■□□□ 1.4
CTCFP49711 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC23.77■■□□□ 1.4
CTCFP49711 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
CTCFP49711 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
CTCFP49711 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
CTCFP49711 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.4
CTCFP49711 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CTCFP49711 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC23.77■■□□□ 1.4
CTCFP49711 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CTCFP49711 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC23.76■■□□□ 1.39
CTCFP49711 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC23.76■■□□□ 1.39
CTCFP49711 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC23.76■■□□□ 1.39
CTCFP49711 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC23.76■■□□□ 1.39
CTCFP49711 AL031133.1-201ENST00000406807 723 ntBASIC23.76■■□□□ 1.39
CTCFP49711 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC23.76■■□□□ 1.39
CTCFP49711 FDX2-207ENST00000494368 584 ntTSL 4 BASIC23.76■■□□□ 1.39
CTCFP49711 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC23.76■■□□□ 1.39
CTCFP49711 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC23.76■■□□□ 1.39
CTCFP49711 MYC-208ENST00000641036 567 ntBASIC23.76■■□□□ 1.39
CTCFP49711 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC23.76■■□□□ 1.39
CTCFP49711 CYP21A1P-202ENST00000354927 1481 ntBASIC23.75■■□□□ 1.39
CTCFP49711 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC23.75■■□□□ 1.39
CTCFP49711 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC23.75■■□□□ 1.39
CTCFP49711 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC23.75■■□□□ 1.39
CTCFP49711 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC23.75■■□□□ 1.39
CTCFP49711 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CTCFP49711 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC23.75■■□□□ 1.39
CTCFP49711 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC23.75■■□□□ 1.39
CTCFP49711 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC23.75■■□□□ 1.39
CTCFP49711 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC23.75■■□□□ 1.39
CTCFP49711 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CTCFP49711 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC23.75■■□□□ 1.39
CTCFP49711 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC23.75■■□□□ 1.39
CTCFP49711 LINC00526-201ENST00000581067 1875 ntBASIC23.75■■□□□ 1.39
CTCFP49711 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC23.74■■□□□ 1.39
CTCFP49711 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC23.74■■□□□ 1.39
CTCFP49711 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
CTCFP49711 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC23.74■■□□□ 1.39
CTCFP49711 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
CTCFP49711 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC23.74■■□□□ 1.39
CTCFP49711 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC23.74■■□□□ 1.39
CTCFP49711 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC23.74■■□□□ 1.39
CTCFP49711 BX664615.1-201ENST00000443558 458 ntBASIC23.74■■□□□ 1.39
CTCFP49711 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC23.74■■□□□ 1.39
CTCFP49711 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
CTCFP49711 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
CTCFP49711 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
CTCFP49711 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC23.74■■□□□ 1.39
CTCFP49711 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC23.74■■□□□ 1.39
CTCFP49711 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
CTCFP49711 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC23.74■■□□□ 1.39
CTCFP49711 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
CTCFP49711 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC23.73■■□□□ 1.39
CTCFP49711 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
CTCFP49711 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
CTCFP49711 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
CTCFP49711 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC23.73■■□□□ 1.39
CTCFP49711 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
CTCFP49711 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC23.73■■□□□ 1.39
CTCFP49711 SAPCD2P2-201ENST00000431719 1174 ntBASIC23.73■■□□□ 1.39
CTCFP49711 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC23.73■■□□□ 1.39
CTCFP49711 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC23.73■■□□□ 1.39
CTCFP49711 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC23.73■■□□□ 1.39
CTCFP49711 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC23.73■■□□□ 1.39
CTCFP49711 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC23.73■■□□□ 1.39
CTCFP49711 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC23.73■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms