Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
TNFRSF4P43489 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC20.65■□□□□ 0.9
TNFRSF4P43489 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC20.65■□□□□ 0.9
TNFRSF4P43489 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
TNFRSF4P43489 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
TNFRSF4P43489 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TNFRSF4P43489 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.9
TNFRSF4P43489 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.9
TNFRSF4P43489 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
TNFRSF4P43489 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC20.64■□□□□ 0.9
TNFRSF4P43489 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TNFRSF4P43489 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TNFRSF4P43489 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TNFRSF4P43489 RPS2P55-201ENST00000397318 883 ntBASIC20.64■□□□□ 0.89
TNFRSF4P43489 AC239809.2-201ENST00000415381 517 ntBASIC20.64■□□□□ 0.89
TNFRSF4P43489 SNORA78-201ENST00000459373 127 ntBASIC20.64■□□□□ 0.89
TNFRSF4P43489 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC20.64■□□□□ 0.89
TNFRSF4P43489 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC20.64■□□□□ 0.89
TNFRSF4P43489 AC107956.1-201ENST00000494359 873 ntBASIC20.64■□□□□ 0.89
TNFRSF4P43489 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
TNFRSF4P43489 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC20.64■□□□□ 0.89
TNFRSF4P43489 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
TNFRSF4P43489 AC110285.5-201ENST00000611501 352 ntBASIC20.64■□□□□ 0.89
TNFRSF4P43489 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
TNFRSF4P43489 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TNFRSF4P43489 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TNFRSF4P43489 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
TNFRSF4P43489 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC20.63■□□□□ 0.89
TNFRSF4P43489 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC20.63■□□□□ 0.89
TNFRSF4P43489 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC20.63■□□□□ 0.89
TNFRSF4P43489 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
TNFRSF4P43489 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
TNFRSF4P43489 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC20.63■□□□□ 0.89
TNFRSF4P43489 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TNFRSF4P43489 MDFI-202ENST00000373050 809 ntTSL 2 BASIC20.63■□□□□ 0.89
TNFRSF4P43489 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC20.63■□□□□ 0.89
TNFRSF4P43489 AC233702.5-201ENST00000584107 538 ntBASIC20.63■□□□□ 0.89
TNFRSF4P43489 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC20.63■□□□□ 0.89
TNFRSF4P43489 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TNFRSF4P43489 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TNFRSF4P43489 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
TNFRSF4P43489 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC20.63■□□□□ 0.89
TNFRSF4P43489 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC20.63■□□□□ 0.89
TNFRSF4P43489 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
TNFRSF4P43489 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
TNFRSF4P43489 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC20.62■□□□□ 0.89
TNFRSF4P43489 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TNFRSF4P43489 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TNFRSF4P43489 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
TNFRSF4P43489 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
TNFRSF4P43489 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC20.62■□□□□ 0.89
TNFRSF4P43489 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
TNFRSF4P43489 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
TNFRSF4P43489 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC20.62■□□□□ 0.89
TNFRSF4P43489 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC20.62■□□□□ 0.89
TNFRSF4P43489 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
TNFRSF4P43489 AP001412.1-201ENST00000608405 714 ntBASIC20.62■□□□□ 0.89
TNFRSF4P43489 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
TNFRSF4P43489 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC20.62■□□□□ 0.89
TNFRSF4P43489 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
TNFRSF4P43489 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
TNFRSF4P43489 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TNFRSF4P43489 AL135905.2-201ENST00000584934 1404 ntBASIC20.61■□□□□ 0.89
TNFRSF4P43489 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TNFRSF4P43489 STAC-204ENST00000457375 1366 ntTSL 2 BASIC20.61■□□□□ 0.89
TNFRSF4P43489 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC20.61■□□□□ 0.89
TNFRSF4P43489 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
TNFRSF4P43489 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
TNFRSF4P43489 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
TNFRSF4P43489 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC20.61■□□□□ 0.89
TNFRSF4P43489 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC20.61■□□□□ 0.89
TNFRSF4P43489 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
TNFRSF4P43489 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC20.61■□□□□ 0.89
TNFRSF4P43489 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
TNFRSF4P43489 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
TNFRSF4P43489 AC027702.1-201ENST00000563810 1770 ntBASIC20.61■□□□□ 0.89
TNFRSF4P43489 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TNFRSF4P43489 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TNFRSF4P43489 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TNFRSF4P43489 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC20.6■□□□□ 0.89
TNFRSF4P43489 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
TNFRSF4P43489 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
TNFRSF4P43489 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
TNFRSF4P43489 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
TNFRSF4P43489 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC20.6■□□□□ 0.89
TNFRSF4P43489 KRASP1-201ENST00000407852 552 ntBASIC20.6■□□□□ 0.89
TNFRSF4P43489 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
TNFRSF4P43489 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC20.6■□□□□ 0.89
TNFRSF4P43489 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TNFRSF4P43489 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC20.6■□□□□ 0.89
TNFRSF4P43489 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC20.6■□□□□ 0.89
TNFRSF4P43489 AC023632.3-201ENST00000521633 145 ntBASIC20.6■□□□□ 0.89
TNFRSF4P43489 TK2-204ENST00000525974 1178 ntTSL 2 BASIC20.6■□□□□ 0.89
TNFRSF4P43489 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC20.6■□□□□ 0.89
TNFRSF4P43489 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
TNFRSF4P43489 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC20.6■□□□□ 0.89
TNFRSF4P43489 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
TNFRSF4P43489 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
TNFRSF4P43489 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
TNFRSF4P43489 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms