Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC18.68■□□□□ 0.58
MSX1P28360 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
MSX1P28360 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC18.68■□□□□ 0.58
MSX1P28360 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
MSX1P28360 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC18.68■□□□□ 0.58
MSX1P28360 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC18.68■□□□□ 0.58
MSX1P28360 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC18.68■□□□□ 0.58
MSX1P28360 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
MSX1P28360 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
MSX1P28360 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC18.68■□□□□ 0.58
MSX1P28360 MIPEPP3-201ENST00000412105 444 ntBASIC18.68■□□□□ 0.58
MSX1P28360 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
MSX1P28360 ITM2C-210ENST00000620962 501 ntBASIC18.68■□□□□ 0.58
MSX1P28360 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC18.68■□□□□ 0.58
MSX1P28360 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC18.68■□□□□ 0.58
MSX1P28360 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
MSX1P28360 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
MSX1P28360 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
MSX1P28360 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
MSX1P28360 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
MSX1P28360 MKRN4P-201ENST00000444706 1521 ntBASIC18.68■□□□□ 0.58
MSX1P28360 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
MSX1P28360 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
MSX1P28360 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC18.68■□□□□ 0.58
MSX1P28360 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
MSX1P28360 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
MSX1P28360 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
MSX1P28360 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
MSX1P28360 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
MSX1P28360 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
MSX1P28360 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC18.67■□□□□ 0.58
MSX1P28360 AL137060.1-201ENST00000618151 2648 ntBASIC18.67■□□□□ 0.58
MSX1P28360 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
MSX1P28360 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
MSX1P28360 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC18.67■□□□□ 0.58
MSX1P28360 MCRIP2P1-201ENST00000394346 511 ntBASIC18.67■□□□□ 0.58
MSX1P28360 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC18.67■□□□□ 0.58
MSX1P28360 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
MSX1P28360 AC093827.2-201ENST00000512654 315 ntBASIC18.67■□□□□ 0.58
MSX1P28360 RNA5SP413-201ENST00000516373 109 ntBASIC18.67■□□□□ 0.58
MSX1P28360 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
MSX1P28360 AC008687.6-201ENST00000596318 630 ntBASIC18.67■□□□□ 0.58
MSX1P28360 MARS-234ENST00000630571 216 ntTSL 5 BASIC18.67■□□□□ 0.58
MSX1P28360 MARS-235ENST00000630803 183 ntTSL 3 BASIC18.67■□□□□ 0.58
MSX1P28360 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
MSX1P28360 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
MSX1P28360 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
MSX1P28360 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
MSX1P28360 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
MSX1P28360 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
MSX1P28360 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC18.66■□□□□ 0.58
MSX1P28360 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
MSX1P28360 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
MSX1P28360 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC18.66■□□□□ 0.58
MSX1P28360 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC18.66■□□□□ 0.58
MSX1P28360 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC18.66■□□□□ 0.58
MSX1P28360 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
MSX1P28360 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC18.66■□□□□ 0.58
MSX1P28360 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC18.66■□□□□ 0.58
MSX1P28360 PPP1R14BP2-201ENST00000426284 444 ntBASIC18.66■□□□□ 0.58
MSX1P28360 DET1-205ENST00000558413 583 ntTSL 4 BASIC18.66■□□□□ 0.58
MSX1P28360 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
MSX1P28360 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
MSX1P28360 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC18.66■□□□□ 0.58
MSX1P28360 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC18.66■□□□□ 0.58
MSX1P28360 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC18.66■□□□□ 0.58
MSX1P28360 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
MSX1P28360 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
MSX1P28360 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
MSX1P28360 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
MSX1P28360 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
MSX1P28360 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC18.65■□□□□ 0.58
MSX1P28360 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
MSX1P28360 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
MSX1P28360 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC18.65■□□□□ 0.58
MSX1P28360 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
MSX1P28360 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
MSX1P28360 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC18.65■□□□□ 0.58
MSX1P28360 MIR2861-201ENST00000636310 90 ntBASIC18.65■□□□□ 0.58
MSX1P28360 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC18.65■□□□□ 0.58
MSX1P28360 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
MSX1P28360 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
MSX1P28360 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
MSX1P28360 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC18.65■□□□□ 0.58
MSX1P28360 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
MSX1P28360 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC18.65■□□□□ 0.58
MSX1P28360 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC18.65■□□□□ 0.58
MSX1P28360 CYP21A1P-202ENST00000354927 1481 ntBASIC18.65■□□□□ 0.58
MSX1P28360 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
MSX1P28360 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC18.64■□□□□ 0.57
MSX1P28360 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
MSX1P28360 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC18.64■□□□□ 0.57
MSX1P28360 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
MSX1P28360 KRT18P29-201ENST00000397031 1267 ntBASIC18.64■□□□□ 0.57
MSX1P28360 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC18.64■□□□□ 0.57
MSX1P28360 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
MSX1P28360 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC18.64■□□□□ 0.57
MSX1P28360 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC18.64■□□□□ 0.57
MSX1P28360 PHB2-213ENST00000546111 858 ntTSL 2 BASIC18.64■□□□□ 0.57
MSX1P28360 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms