Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SDC1P18827 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC19.46■□□□□ 0.71
SDC1P18827 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SDC1P18827 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC19.46■□□□□ 0.71
SDC1P18827 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC19.46■□□□□ 0.71
SDC1P18827 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC19.46■□□□□ 0.71
SDC1P18827 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC19.46■□□□□ 0.71
SDC1P18827 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SDC1P18827 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SDC1P18827 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC19.45■□□□□ 0.7
SDC1P18827 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SDC1P18827 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SDC1P18827 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SDC1P18827 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
SDC1P18827 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
SDC1P18827 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SDC1P18827 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
SDC1P18827 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC19.45■□□□□ 0.7
SDC1P18827 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SDC1P18827 CD44-222ENST00000526025 1052 ntTSL 2 BASIC19.45■□□□□ 0.7
SDC1P18827 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC19.45■□□□□ 0.7
SDC1P18827 UBE2DNL-204ENST00000602536 740 ntBASIC19.45■□□□□ 0.7
SDC1P18827 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
SDC1P18827 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SDC1P18827 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
SDC1P18827 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC19.45■□□□□ 0.7
SDC1P18827 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC19.45■□□□□ 0.7
SDC1P18827 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC19.45■□□□□ 0.7
SDC1P18827 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
SDC1P18827 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
SDC1P18827 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SDC1P18827 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
SDC1P18827 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
SDC1P18827 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC19.44■□□□□ 0.7
SDC1P18827 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SDC1P18827 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SDC1P18827 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
SDC1P18827 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SDC1P18827 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC19.44■□□□□ 0.7
SDC1P18827 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC19.44■□□□□ 0.7
SDC1P18827 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC19.44■□□□□ 0.7
SDC1P18827 TFG-210ENST00000620299 1289 ntTSL 5 BASIC19.44■□□□□ 0.7
SDC1P18827 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
SDC1P18827 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC19.44■□□□□ 0.7
SDC1P18827 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC19.44■□□□□ 0.7
SDC1P18827 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
SDC1P18827 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
SDC1P18827 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SDC1P18827 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SDC1P18827 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SDC1P18827 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC19.43■□□□□ 0.7
SDC1P18827 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SDC1P18827 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SDC1P18827 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SDC1P18827 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SDC1P18827 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
SDC1P18827 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
SDC1P18827 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC19.43■□□□□ 0.7
SDC1P18827 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC19.43■□□□□ 0.7
SDC1P18827 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC19.43■□□□□ 0.7
SDC1P18827 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC19.43■□□□□ 0.7
SDC1P18827 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC19.43■□□□□ 0.7
SDC1P18827 SMG8-203ENST00000578922 2178 ntBASIC19.43■□□□□ 0.7
SDC1P18827 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC19.43■□□□□ 0.7
SDC1P18827 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
SDC1P18827 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
SDC1P18827 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC19.42■□□□□ 0.7
SDC1P18827 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC19.42■□□□□ 0.7
SDC1P18827 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SDC1P18827 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SDC1P18827 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SDC1P18827 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SDC1P18827 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC19.42■□□□□ 0.7
SDC1P18827 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
SDC1P18827 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SDC1P18827 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC19.42■□□□□ 0.7
SDC1P18827 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC19.42■□□□□ 0.7
SDC1P18827 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SDC1P18827 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SDC1P18827 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SDC1P18827 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC19.42■□□□□ 0.7
SDC1P18827 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
SDC1P18827 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC19.42■□□□□ 0.7
SDC1P18827 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC19.42■□□□□ 0.7
SDC1P18827 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SDC1P18827 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SDC1P18827 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC19.41■□□□□ 0.7
SDC1P18827 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SDC1P18827 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
SDC1P18827 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
SDC1P18827 HACD1-201ENST00000326961 773 ntTSL 2 BASIC19.41■□□□□ 0.7
SDC1P18827 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
SDC1P18827 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SDC1P18827 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SDC1P18827 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC19.41■□□□□ 0.7
SDC1P18827 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC19.41■□□□□ 0.7
SDC1P18827 MYCNOS-205ENST00000641950 531 ntBASIC19.41■□□□□ 0.7
SDC1P18827 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
SDC1P18827 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC19.41■□□□□ 0.7
SDC1P18827 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 65.7 ms