Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
HOXC4P09017 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC20.02■□□□□ 0.8
HOXC4P09017 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
HOXC4P09017 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.79
HOXC4P09017 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC20.02■□□□□ 0.79
HOXC4P09017 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC20.02■□□□□ 0.79
HOXC4P09017 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
HOXC4P09017 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HOXC4P09017 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
HOXC4P09017 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC20.01■□□□□ 0.79
HOXC4P09017 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
HOXC4P09017 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HOXC4P09017 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
HOXC4P09017 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HOXC4P09017 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HOXC4P09017 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HOXC4P09017 KRT17P3-201ENST00000420566 1262 ntBASIC20.01■□□□□ 0.79
HOXC4P09017 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC20.01■□□□□ 0.79
HOXC4P09017 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC20.01■□□□□ 0.79
HOXC4P09017 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC20.01■□□□□ 0.79
HOXC4P09017 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC20.01■□□□□ 0.79
HOXC4P09017 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC20.01■□□□□ 0.79
HOXC4P09017 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HOXC4P09017 ERF-202ENST00000440177 2032 ntTSL 2 BASIC20.01■□□□□ 0.79
HOXC4P09017 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HOXC4P09017 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
HOXC4P09017 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
HOXC4P09017 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
HOXC4P09017 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
HOXC4P09017 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
HOXC4P09017 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HOXC4P09017 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HOXC4P09017 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HOXC4P09017 AC023632.3-201ENST00000521633 145 ntBASIC20■□□□□ 0.79
HOXC4P09017 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC20■□□□□ 0.79
HOXC4P09017 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HOXC4P09017 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC20■□□□□ 0.79
HOXC4P09017 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC20■□□□□ 0.79
HOXC4P09017 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
HOXC4P09017 LINC00565-201ENST00000562710 2331 ntBASIC20■□□□□ 0.79
HOXC4P09017 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HOXC4P09017 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HOXC4P09017 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC20■□□□□ 0.79
HOXC4P09017 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HOXC4P09017 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC20■□□□□ 0.79
HOXC4P09017 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
HOXC4P09017 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC20■□□□□ 0.79
HOXC4P09017 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC19.99■□□□□ 0.79
HOXC4P09017 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
HOXC4P09017 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC19.99■□□□□ 0.79
HOXC4P09017 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
HOXC4P09017 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
HOXC4P09017 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
HOXC4P09017 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
HOXC4P09017 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC19.99■□□□□ 0.79
HOXC4P09017 MOK-233ENST00000524214 1539 ntTSL 2 BASIC19.99■□□□□ 0.79
HOXC4P09017 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
HOXC4P09017 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC19.99■□□□□ 0.79
HOXC4P09017 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
HOXC4P09017 GCSHP5-201ENST00000443090 522 ntBASIC19.99■□□□□ 0.79
HOXC4P09017 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC19.99■□□□□ 0.79
HOXC4P09017 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
HOXC4P09017 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC19.99■□□□□ 0.79
HOXC4P09017 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
HOXC4P09017 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
HOXC4P09017 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC19.99■□□□□ 0.79
HOXC4P09017 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
HOXC4P09017 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC19.99■□□□□ 0.79
HOXC4P09017 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
HOXC4P09017 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
HOXC4P09017 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
HOXC4P09017 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC19.98■□□□□ 0.79
HOXC4P09017 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC19.98■□□□□ 0.79
HOXC4P09017 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
HOXC4P09017 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
HOXC4P09017 POM121L13P-201ENST00000422362 380 ntBASIC19.98■□□□□ 0.79
HOXC4P09017 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
HOXC4P09017 AC098590.1-201ENST00000468126 897 ntBASIC19.98■□□□□ 0.79
HOXC4P09017 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC19.98■□□□□ 0.79
HOXC4P09017 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
HOXC4P09017 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC19.98■□□□□ 0.79
HOXC4P09017 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
HOXC4P09017 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
HOXC4P09017 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC19.98■□□□□ 0.79
HOXC4P09017 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
HOXC4P09017 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HOXC4P09017 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
HOXC4P09017 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC19.97■□□□□ 0.79
HOXC4P09017 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
HOXC4P09017 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
HOXC4P09017 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HOXC4P09017 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HOXC4P09017 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
HOXC4P09017 AL390719.1-204ENST00000412397 1219 ntBASIC19.97■□□□□ 0.79
HOXC4P09017 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC19.97■□□□□ 0.79
HOXC4P09017 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC19.97■□□□□ 0.79
HOXC4P09017 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
HOXC4P09017 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC19.97■□□□□ 0.79
HOXC4P09017 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
HOXC4P09017 KLF2-202ENST00000592003 564 ntTSL 3 BASIC19.97■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 63 ms