Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SEMA3DO95025 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
SEMA3DO95025 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SEMA3DO95025 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SEMA3DO95025 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SEMA3DO95025 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
SEMA3DO95025 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
SEMA3DO95025 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
SEMA3DO95025 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SEMA3DO95025 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC19.53■□□□□ 0.72
SEMA3DO95025 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC19.53■□□□□ 0.72
SEMA3DO95025 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SEMA3DO95025 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SEMA3DO95025 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
SEMA3DO95025 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC19.53■□□□□ 0.72
SEMA3DO95025 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC19.53■□□□□ 0.72
SEMA3DO95025 AL157384.1-201ENST00000445995 2473 ntBASIC19.53■□□□□ 0.72
SEMA3DO95025 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC19.53■□□□□ 0.72
SEMA3DO95025 AC073314.1-201ENST00000568729 2216 ntBASIC19.53■□□□□ 0.72
SEMA3DO95025 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SEMA3DO95025 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC19.53■□□□□ 0.72
SEMA3DO95025 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SEMA3DO95025 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SEMA3DO95025 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SEMA3DO95025 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC19.53■□□□□ 0.72
SEMA3DO95025 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SEMA3DO95025 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SEMA3DO95025 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SEMA3DO95025 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SEMA3DO95025 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC19.52■□□□□ 0.72
SEMA3DO95025 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
SEMA3DO95025 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC19.52■□□□□ 0.72
SEMA3DO95025 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SEMA3DO95025 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
SEMA3DO95025 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC19.52■□□□□ 0.72
SEMA3DO95025 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SEMA3DO95025 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SEMA3DO95025 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC19.52■□□□□ 0.72
SEMA3DO95025 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SEMA3DO95025 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC19.52■□□□□ 0.72
SEMA3DO95025 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC19.52■□□□□ 0.72
SEMA3DO95025 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SEMA3DO95025 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SEMA3DO95025 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
SEMA3DO95025 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
SEMA3DO95025 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
SEMA3DO95025 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
SEMA3DO95025 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.71
SEMA3DO95025 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SEMA3DO95025 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
SEMA3DO95025 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SEMA3DO95025 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SEMA3DO95025 CASP6-205ENST00000505486 538 ntTSL 4 BASIC19.51■□□□□ 0.71
SEMA3DO95025 GAS2L1P2-201ENST00000436355 1356 ntBASIC19.51■□□□□ 0.71
SEMA3DO95025 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SEMA3DO95025 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SEMA3DO95025 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SEMA3DO95025 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
SEMA3DO95025 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC19.51■□□□□ 0.71
SEMA3DO95025 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SEMA3DO95025 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC19.51■□□□□ 0.71
SEMA3DO95025 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC19.51■□□□□ 0.71
SEMA3DO95025 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC19.51■□□□□ 0.71
SEMA3DO95025 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SEMA3DO95025 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SEMA3DO95025 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SEMA3DO95025 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
SEMA3DO95025 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC19.5■□□□□ 0.71
SEMA3DO95025 PBX1-209ENST00000485769 834 ntTSL 2 BASIC19.5■□□□□ 0.71
SEMA3DO95025 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC19.5■□□□□ 0.71
SEMA3DO95025 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC19.5■□□□□ 0.71
SEMA3DO95025 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC19.5■□□□□ 0.71
SEMA3DO95025 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
SEMA3DO95025 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SEMA3DO95025 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SEMA3DO95025 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC19.5■□□□□ 0.71
SEMA3DO95025 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC19.5■□□□□ 0.71
SEMA3DO95025 AC020907.5-201ENST00000624372 1936 ntBASIC19.5■□□□□ 0.71
SEMA3DO95025 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
SEMA3DO95025 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SEMA3DO95025 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
SEMA3DO95025 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
SEMA3DO95025 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC19.5■□□□□ 0.71
SEMA3DO95025 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SEMA3DO95025 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC19.5■□□□□ 0.71
SEMA3DO95025 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC19.49■□□□□ 0.71
SEMA3DO95025 LINC01006-201ENST00000333319 2292 ntBASIC19.49■□□□□ 0.71
SEMA3DO95025 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SEMA3DO95025 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
SEMA3DO95025 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
SEMA3DO95025 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
SEMA3DO95025 BMP1-204ENST00000397814 836 ntTSL 4 BASIC19.49■□□□□ 0.71
SEMA3DO95025 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
SEMA3DO95025 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC19.49■□□□□ 0.71
SEMA3DO95025 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SEMA3DO95025 BID-214ENST00000617586 542 ntTSL 5 BASIC19.49■□□□□ 0.71
SEMA3DO95025 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC19.49■□□□□ 0.71
SEMA3DO95025 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC19.49■□□□□ 0.71
SEMA3DO95025 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC19.49■□□□□ 0.71
SEMA3DO95025 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 72.4 ms