Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC9.21□□□□□ -0.93
USH2AO75445 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC9.21□□□□□ -0.93
USH2AO75445 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC9.21□□□□□ -0.93
USH2AO75445 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC9.21□□□□□ -0.93
USH2AO75445 CR769767.2-201ENST00000622735 460 ntBASIC9.21□□□□□ -0.93
USH2AO75445 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC9.21□□□□□ -0.93
USH2AO75445 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.93
USH2AO75445 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.93
USH2AO75445 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC9.21□□□□□ -0.93
USH2AO75445 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC9.21□□□□□ -0.93
USH2AO75445 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC9.21□□□□□ -0.93
USH2AO75445 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC9.21□□□□□ -0.93
USH2AO75445 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.94
USH2AO75445 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC9.21□□□□□ -0.94
USH2AO75445 AC091799.1-201ENST00000422823 811 ntBASIC9.21□□□□□ -0.94
USH2AO75445 AL353807.1-201ENST00000427475 662 ntBASIC9.21□□□□□ -0.94
USH2AO75445 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC9.21□□□□□ -0.94
USH2AO75445 AC092183.1-201ENST00000469884 875 ntBASIC9.21□□□□□ -0.94
USH2AO75445 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC9.21□□□□□ -0.94
USH2AO75445 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC9.21□□□□□ -0.94
USH2AO75445 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.94
USH2AO75445 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC9.21□□□□□ -0.94
USH2AO75445 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC9.21□□□□□ -0.94
USH2AO75445 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC9.21□□□□□ -0.94
USH2AO75445 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.94
USH2AO75445 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC9.21□□□□□ -0.94
USH2AO75445 KRT16P5-201ENST00000455284 522 ntBASIC9.21□□□□□ -0.94
USH2AO75445 ECEL1P2-202ENST00000465689 757 ntBASIC9.21□□□□□ -0.94
USH2AO75445 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
USH2AO75445 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
USH2AO75445 AC128688.1-201ENST00000487626 519 ntBASIC9.2□□□□□ -0.94
USH2AO75445 AC116562.2-201ENST00000507042 360 ntBASIC9.2□□□□□ -0.94
USH2AO75445 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
USH2AO75445 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC9.2□□□□□ -0.94
USH2AO75445 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
USH2AO75445 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC9.2□□□□□ -0.94
USH2AO75445 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC9.2□□□□□ -0.94
USH2AO75445 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
USH2AO75445 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC9.2□□□□□ -0.94
USH2AO75445 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC9.2□□□□□ -0.94
USH2AO75445 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC9.2□□□□□ -0.94
USH2AO75445 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC9.2□□□□□ -0.94
USH2AO75445 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC9.2□□□□□ -0.94
USH2AO75445 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
USH2AO75445 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
USH2AO75445 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
USH2AO75445 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
USH2AO75445 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC9.2□□□□□ -0.94
USH2AO75445 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC9.2□□□□□ -0.94
USH2AO75445 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
USH2AO75445 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC9.2□□□□□ -0.94
USH2AO75445 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC9.2□□□□□ -0.94
USH2AO75445 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
USH2AO75445 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
USH2AO75445 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC9.2□□□□□ -0.94
USH2AO75445 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
USH2AO75445 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
USH2AO75445 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC9.2□□□□□ -0.94
USH2AO75445 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
USH2AO75445 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
USH2AO75445 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC9.2□□□□□ -0.94
USH2AO75445 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC9.2□□□□□ -0.94
USH2AO75445 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
USH2AO75445 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC9.2□□□□□ -0.94
USH2AO75445 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC9.2□□□□□ -0.94
USH2AO75445 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC9.2□□□□□ -0.94
USH2AO75445 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC9.2□□□□□ -0.94
USH2AO75445 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC9.2□□□□□ -0.94
USH2AO75445 LINC02084-201ENST00000606069 1096 ntBASIC9.2□□□□□ -0.94
USH2AO75445 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
USH2AO75445 AC011558.1-201ENST00000623459 338 ntBASIC9.2□□□□□ -0.94
USH2AO75445 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC9.2□□□□□ -0.94
USH2AO75445 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC9.2□□□□□ -0.94
USH2AO75445 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC9.19□□□□□ -0.94
USH2AO75445 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC9.19□□□□□ -0.94
USH2AO75445 SAPCD2P1-201ENST00000395413 1184 ntBASIC9.19□□□□□ -0.94
USH2AO75445 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC9.19□□□□□ -0.94
USH2AO75445 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC9.19□□□□□ -0.94
USH2AO75445 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC9.19□□□□□ -0.94
USH2AO75445 IRF5-214ENST00000613821 595 ntTSL 5 BASIC9.19□□□□□ -0.94
USH2AO75445 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC9.19□□□□□ -0.94
USH2AO75445 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC9.19□□□□□ -0.94
USH2AO75445 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC9.19□□□□□ -0.94
USH2AO75445 AC130371.2-201ENST00000619443 611 ntBASIC9.19□□□□□ -0.94
USH2AO75445 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
USH2AO75445 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC9.19□□□□□ -0.94
USH2AO75445 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC9.19□□□□□ -0.94
USH2AO75445 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC9.19□□□□□ -0.94
USH2AO75445 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC9.19□□□□□ -0.94
USH2AO75445 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC9.19□□□□□ -0.94
USH2AO75445 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
USH2AO75445 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC9.19□□□□□ -0.94
USH2AO75445 PTK2-216ENST00000519881 863 ntTSL 3 BASIC9.19□□□□□ -0.94
USH2AO75445 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC9.19□□□□□ -0.94
USH2AO75445 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC9.19□□□□□ -0.94
USH2AO75445 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC9.19□□□□□ -0.94
USH2AO75445 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC9.19□□□□□ -0.94
USH2AO75445 KRT8P45-201ENST00000414328 1447 ntBASIC9.19□□□□□ -0.94
USH2AO75445 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
USH2AO75445 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC9.19□□□□□ -0.94
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms