Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC19.86■□□□□ 0.77
HDAC3O15379 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
HDAC3O15379 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
HDAC3O15379 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
HDAC3O15379 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
HDAC3O15379 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
HDAC3O15379 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC19.85■□□□□ 0.77
HDAC3O15379 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HDAC3O15379 MPST-204ENST00000404393 1329 ntTSL 5 BASIC19.85■□□□□ 0.77
HDAC3O15379 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HDAC3O15379 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
HDAC3O15379 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HDAC3O15379 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
HDAC3O15379 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC19.85■□□□□ 0.77
HDAC3O15379 CPT2-209ENST00000636935 803 ntTSL 5 BASIC19.85■□□□□ 0.77
HDAC3O15379 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HDAC3O15379 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
HDAC3O15379 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
HDAC3O15379 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
HDAC3O15379 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
HDAC3O15379 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HDAC3O15379 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HDAC3O15379 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HDAC3O15379 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC19.84■□□□□ 0.77
HDAC3O15379 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
HDAC3O15379 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC19.84■□□□□ 0.77
HDAC3O15379 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HDAC3O15379 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC19.84■□□□□ 0.77
HDAC3O15379 AC125437.2-201ENST00000625180 2167 ntBASIC19.84■□□□□ 0.77
HDAC3O15379 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC19.84■□□□□ 0.77
HDAC3O15379 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HDAC3O15379 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC19.84■□□□□ 0.77
HDAC3O15379 MIR2861-201ENST00000636310 90 ntBASIC19.84■□□□□ 0.77
HDAC3O15379 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC19.84■□□□□ 0.77
HDAC3O15379 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC19.84■□□□□ 0.77
HDAC3O15379 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
HDAC3O15379 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HDAC3O15379 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HDAC3O15379 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HDAC3O15379 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
HDAC3O15379 AC116562.4-201ENST00000641316 2276 ntBASIC19.83■□□□□ 0.77
HDAC3O15379 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC19.83■□□□□ 0.77
HDAC3O15379 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC19.83■□□□□ 0.77
HDAC3O15379 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
HDAC3O15379 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
HDAC3O15379 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC19.83■□□□□ 0.77
HDAC3O15379 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC19.83■□□□□ 0.77
HDAC3O15379 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC19.83■□□□□ 0.77
HDAC3O15379 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
HDAC3O15379 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC19.83■□□□□ 0.77
HDAC3O15379 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC19.83■□□□□ 0.77
HDAC3O15379 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC19.83■□□□□ 0.77
HDAC3O15379 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC19.83■□□□□ 0.76
HDAC3O15379 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
HDAC3O15379 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
HDAC3O15379 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC19.83■□□□□ 0.76
HDAC3O15379 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC19.83■□□□□ 0.76
HDAC3O15379 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
HDAC3O15379 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HDAC3O15379 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
HDAC3O15379 LBX2-AS1-202ENST00000603175 2083 ntBASIC19.82■□□□□ 0.76
HDAC3O15379 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC19.82■□□□□ 0.76
HDAC3O15379 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HDAC3O15379 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
HDAC3O15379 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
HDAC3O15379 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
HDAC3O15379 AC245052.3-201ENST00000450182 901 ntBASIC19.82■□□□□ 0.76
HDAC3O15379 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
HDAC3O15379 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC19.82■□□□□ 0.76
HDAC3O15379 AC012414.1-201ENST00000556676 535 ntBASIC19.82■□□□□ 0.76
HDAC3O15379 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC19.82■□□□□ 0.76
HDAC3O15379 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC19.82■□□□□ 0.76
HDAC3O15379 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC19.82■□□□□ 0.76
HDAC3O15379 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HDAC3O15379 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC19.82■□□□□ 0.76
HDAC3O15379 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
HDAC3O15379 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
HDAC3O15379 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
HDAC3O15379 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
HDAC3O15379 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
HDAC3O15379 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
HDAC3O15379 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
HDAC3O15379 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
HDAC3O15379 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HDAC3O15379 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HDAC3O15379 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC19.81■□□□□ 0.76
HDAC3O15379 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
HDAC3O15379 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
HDAC3O15379 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC19.81■□□□□ 0.76
HDAC3O15379 GRAMD4P4-201ENST00000613563 1115 ntBASIC19.81■□□□□ 0.76
HDAC3O15379 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HDAC3O15379 KRT16P2-201ENST00000414673 1423 ntBASIC19.81■□□□□ 0.76
HDAC3O15379 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
HDAC3O15379 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC19.81■□□□□ 0.76
HDAC3O15379 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC19.81■□□□□ 0.76
HDAC3O15379 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
HDAC3O15379 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC19.81■□□□□ 0.76
HDAC3O15379 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HDAC3O15379 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HDAC3O15379 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC19.8■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms