Protein–RNA interactions for Protein: A0A0B4J238

TRAV1-2, T-cell receptor alpha variable 1-2 (Fragment), humanhuman

Predictions only

Length 106 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-2A0A0B4J238 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRAV1-2A0A0B4J238 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRAV1-2A0A0B4J238 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
TRAV1-2A0A0B4J238 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
TRAV1-2A0A0B4J238 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
TRAV1-2A0A0B4J238 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC17.75■□□□□ 0.43
TRAV1-2A0A0B4J238 MIR2861-201ENST00000636310 90 ntBASIC17.75■□□□□ 0.43
TRAV1-2A0A0B4J238 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
TRAV1-2A0A0B4J238 H19-201ENST00000411754 1788 ntTSL 5 BASIC17.75■□□□□ 0.43
TRAV1-2A0A0B4J238 AC005332.7-201ENST00000614046 2005 ntBASIC17.75■□□□□ 0.43
TRAV1-2A0A0B4J238 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
TRAV1-2A0A0B4J238 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC17.75■□□□□ 0.43
TRAV1-2A0A0B4J238 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
TRAV1-2A0A0B4J238 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRAV1-2A0A0B4J238 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC17.75■□□□□ 0.43
TRAV1-2A0A0B4J238 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRAV1-2A0A0B4J238 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRAV1-2A0A0B4J238 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC17.75■□□□□ 0.43
TRAV1-2A0A0B4J238 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC17.74■□□□□ 0.43
TRAV1-2A0A0B4J238 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TRAV1-2A0A0B4J238 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRAV1-2A0A0B4J238 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRAV1-2A0A0B4J238 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
TRAV1-2A0A0B4J238 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC17.74■□□□□ 0.43
TRAV1-2A0A0B4J238 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
TRAV1-2A0A0B4J238 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRAV1-2A0A0B4J238 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRAV1-2A0A0B4J238 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRAV1-2A0A0B4J238 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRAV1-2A0A0B4J238 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRAV1-2A0A0B4J238 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC17.74■□□□□ 0.43
TRAV1-2A0A0B4J238 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
TRAV1-2A0A0B4J238 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRAV1-2A0A0B4J238 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRAV1-2A0A0B4J238 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TRAV1-2A0A0B4J238 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRAV1-2A0A0B4J238 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
TRAV1-2A0A0B4J238 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC17.73■□□□□ 0.43
TRAV1-2A0A0B4J238 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TRAV1-2A0A0B4J238 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRAV1-2A0A0B4J238 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRAV1-2A0A0B4J238 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC17.73■□□□□ 0.43
TRAV1-2A0A0B4J238 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
TRAV1-2A0A0B4J238 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRAV1-2A0A0B4J238 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC17.73■□□□□ 0.43
TRAV1-2A0A0B4J238 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRAV1-2A0A0B4J238 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC17.73■□□□□ 0.43
TRAV1-2A0A0B4J238 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
TRAV1-2A0A0B4J238 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC17.73■□□□□ 0.43
TRAV1-2A0A0B4J238 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC17.73■□□□□ 0.43
TRAV1-2A0A0B4J238 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRAV1-2A0A0B4J238 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC17.73■□□□□ 0.43
TRAV1-2A0A0B4J238 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRAV1-2A0A0B4J238 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TRAV1-2A0A0B4J238 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC17.72■□□□□ 0.43
TRAV1-2A0A0B4J238 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC17.72■□□□□ 0.43
TRAV1-2A0A0B4J238 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRAV1-2A0A0B4J238 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TRAV1-2A0A0B4J238 POLI-202ENST00000406285 2030 ntTSL 2 BASIC17.72■□□□□ 0.43
TRAV1-2A0A0B4J238 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRAV1-2A0A0B4J238 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRAV1-2A0A0B4J238 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRAV1-2A0A0B4J238 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC17.72■□□□□ 0.43
TRAV1-2A0A0B4J238 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC17.72■□□□□ 0.43
TRAV1-2A0A0B4J238 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRAV1-2A0A0B4J238 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TRAV1-2A0A0B4J238 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TRAV1-2A0A0B4J238 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC17.72■□□□□ 0.43
TRAV1-2A0A0B4J238 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TRAV1-2A0A0B4J238 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC17.72■□□□□ 0.43
TRAV1-2A0A0B4J238 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRAV1-2A0A0B4J238 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TRAV1-2A0A0B4J238 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRAV1-2A0A0B4J238 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TRAV1-2A0A0B4J238 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC17.72■□□□□ 0.43
TRAV1-2A0A0B4J238 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRAV1-2A0A0B4J238 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC17.72■□□□□ 0.43
TRAV1-2A0A0B4J238 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC17.72■□□□□ 0.43
TRAV1-2A0A0B4J238 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC17.72■□□□□ 0.43
TRAV1-2A0A0B4J238 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
TRAV1-2A0A0B4J238 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC17.71■□□□□ 0.43
TRAV1-2A0A0B4J238 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
TRAV1-2A0A0B4J238 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
TRAV1-2A0A0B4J238 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRAV1-2A0A0B4J238 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC17.71■□□□□ 0.43
TRAV1-2A0A0B4J238 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRAV1-2A0A0B4J238 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRAV1-2A0A0B4J238 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRAV1-2A0A0B4J238 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC17.71■□□□□ 0.43
TRAV1-2A0A0B4J238 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
TRAV1-2A0A0B4J238 PTMA-205ENST00000410064 814 ntTSL 2 BASIC17.71■□□□□ 0.43
TRAV1-2A0A0B4J238 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
TRAV1-2A0A0B4J238 IGHV3-19-201ENST00000521488 291 ntBASIC17.71■□□□□ 0.43
TRAV1-2A0A0B4J238 GRAMD4P7-201ENST00000578182 1232 ntBASIC17.71■□□□□ 0.43
TRAV1-2A0A0B4J238 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRAV1-2A0A0B4J238 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRAV1-2A0A0B4J238 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
TRAV1-2A0A0B4J238 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRAV1-2A0A0B4J238 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRAV1-2A0A0B4J238 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC17.71■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms