Protein–RNA interactions for Protein: Q9H347

UBQLN3, Ubiquilin-3, humanhuman

Predictions only

Length 655 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN3Q9H347 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC24.3■■□□□ 1.48
UBQLN3Q9H347 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
UBQLN3Q9H347 AC139426.1-201ENST00000568218 2529 ntBASIC24.29■■□□□ 1.48
UBQLN3Q9H347 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC24.29■■□□□ 1.48
UBQLN3Q9H347 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC24.29■■□□□ 1.48
UBQLN3Q9H347 ST7-AS1-201ENST00000456775 1889 ntBASIC24.29■■□□□ 1.48
UBQLN3Q9H347 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC24.29■■□□□ 1.48
UBQLN3Q9H347 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC24.28■■□□□ 1.48
UBQLN3Q9H347 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
UBQLN3Q9H347 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
UBQLN3Q9H347 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
UBQLN3Q9H347 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
UBQLN3Q9H347 RPS2-209ENST00000529806 993 ntTSL 3 BASIC24.27■■□□□ 1.48
UBQLN3Q9H347 AC044849.2-201ENST00000606596 710 ntBASIC24.27■■□□□ 1.48
UBQLN3Q9H347 SHF-206ENST00000560471 2499 ntTSL 5 BASIC24.26■■□□□ 1.47
UBQLN3Q9H347 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC24.26■■□□□ 1.47
UBQLN3Q9H347 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC24.26■■□□□ 1.47
UBQLN3Q9H347 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC24.26■■□□□ 1.47
UBQLN3Q9H347 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
UBQLN3Q9H347 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC24.25■■□□□ 1.47
UBQLN3Q9H347 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC24.25■■□□□ 1.47
UBQLN3Q9H347 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC24.24■■□□□ 1.47
UBQLN3Q9H347 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC24.22■■□□□ 1.47
UBQLN3Q9H347 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
UBQLN3Q9H347 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC24.22■■□□□ 1.47
UBQLN3Q9H347 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC24.22■■□□□ 1.47
UBQLN3Q9H347 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC24.22■■□□□ 1.47
UBQLN3Q9H347 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
UBQLN3Q9H347 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
UBQLN3Q9H347 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
UBQLN3Q9H347 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC24.21■■□□□ 1.47
UBQLN3Q9H347 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
UBQLN3Q9H347 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC24.21■■□□□ 1.47
UBQLN3Q9H347 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC24.19■■□□□ 1.46
UBQLN3Q9H347 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC24.19■■□□□ 1.46
UBQLN3Q9H347 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
UBQLN3Q9H347 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC24.19■■□□□ 1.46
UBQLN3Q9H347 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC24.19■■□□□ 1.46
UBQLN3Q9H347 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC24.18■■□□□ 1.46
UBQLN3Q9H347 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
UBQLN3Q9H347 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC24.18■■□□□ 1.46
UBQLN3Q9H347 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
UBQLN3Q9H347 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
UBQLN3Q9H347 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
UBQLN3Q9H347 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC24.16■■□□□ 1.46
UBQLN3Q9H347 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC24.16■■□□□ 1.46
UBQLN3Q9H347 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC24.16■■□□□ 1.46
UBQLN3Q9H347 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
UBQLN3Q9H347 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC24.15■■□□□ 1.46
UBQLN3Q9H347 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
UBQLN3Q9H347 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
UBQLN3Q9H347 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC24.15■■□□□ 1.46
UBQLN3Q9H347 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
UBQLN3Q9H347 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
UBQLN3Q9H347 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC24.14■■□□□ 1.46
UBQLN3Q9H347 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC24.13■■□□□ 1.45
UBQLN3Q9H347 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC24.13■■□□□ 1.45
UBQLN3Q9H347 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
UBQLN3Q9H347 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC24.13■■□□□ 1.45
UBQLN3Q9H347 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
UBQLN3Q9H347 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC24.12■■□□□ 1.45
UBQLN3Q9H347 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
UBQLN3Q9H347 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
UBQLN3Q9H347 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
UBQLN3Q9H347 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC24.1■■□□□ 1.45
UBQLN3Q9H347 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC24.1■■□□□ 1.45
UBQLN3Q9H347 AL135925.1-201ENST00000605920 1701 ntBASIC24.1■■□□□ 1.45
UBQLN3Q9H347 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
UBQLN3Q9H347 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
UBQLN3Q9H347 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
UBQLN3Q9H347 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
UBQLN3Q9H347 BOD1-206ENST00000480951 814 ntTSL 2 BASIC24.09■■□□□ 1.45
UBQLN3Q9H347 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC24.09■■□□□ 1.45
UBQLN3Q9H347 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
UBQLN3Q9H347 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC24.07■■□□□ 1.44
UBQLN3Q9H347 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC24.06■■□□□ 1.44
UBQLN3Q9H347 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC24.06■■□□□ 1.44
UBQLN3Q9H347 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC24.06■■□□□ 1.44
UBQLN3Q9H347 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC24.06■■□□□ 1.44
UBQLN3Q9H347 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
UBQLN3Q9H347 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
UBQLN3Q9H347 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
UBQLN3Q9H347 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
UBQLN3Q9H347 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
UBQLN3Q9H347 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC24.05■■□□□ 1.44
UBQLN3Q9H347 AC108673.1-201ENST00000510422 1159 ntBASIC24.05■■□□□ 1.44
UBQLN3Q9H347 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC24.05■■□□□ 1.44
UBQLN3Q9H347 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
UBQLN3Q9H347 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC24.04■■□□□ 1.44
UBQLN3Q9H347 MLEC-202ENST00000412616 841 ntTSL 3 BASIC24.04■■□□□ 1.44
UBQLN3Q9H347 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
UBQLN3Q9H347 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC24.03■■□□□ 1.44
UBQLN3Q9H347 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC24.03■■□□□ 1.44
UBQLN3Q9H347 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
UBQLN3Q9H347 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
UBQLN3Q9H347 MIR6090-201ENST00000622481 60 ntBASIC24.02■■□□□ 1.44
UBQLN3Q9H347 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
UBQLN3Q9H347 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC24.01■■□□□ 1.43
UBQLN3Q9H347 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC24.01■■□□□ 1.43
UBQLN3Q9H347 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC24■■□□□ 1.43
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms