Protein–RNA interactions for Protein: Q96EY7

PTCD3, Pentatricopeptide repeat domain-containing protein 3, mitochondrial, humanhuman

Known RBP Predictions only

Length 689 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3Q96EY7 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
PTCD3Q96EY7 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC25.99■■□□□ 1.75
PTCD3Q96EY7 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC25.98■■□□□ 1.75
PTCD3Q96EY7 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC25.98■■□□□ 1.75
PTCD3Q96EY7 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
PTCD3Q96EY7 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
PTCD3Q96EY7 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
PTCD3Q96EY7 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC25.96■■□□□ 1.75
PTCD3Q96EY7 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
PTCD3Q96EY7 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
PTCD3Q96EY7 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC25.93■■□□□ 1.74
PTCD3Q96EY7 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
PTCD3Q96EY7 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
PTCD3Q96EY7 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC25.92■■□□□ 1.74
PTCD3Q96EY7 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
PTCD3Q96EY7 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
PTCD3Q96EY7 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
PTCD3Q96EY7 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
PTCD3Q96EY7 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
PTCD3Q96EY7 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC25.9■■□□□ 1.74
PTCD3Q96EY7 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
PTCD3Q96EY7 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.73
PTCD3Q96EY7 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
PTCD3Q96EY7 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
PTCD3Q96EY7 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC25.88■■□□□ 1.73
PTCD3Q96EY7 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC25.88■■□□□ 1.73
PTCD3Q96EY7 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
PTCD3Q96EY7 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
PTCD3Q96EY7 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
PTCD3Q96EY7 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC25.87■■□□□ 1.73
PTCD3Q96EY7 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC25.87■■□□□ 1.73
PTCD3Q96EY7 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
PTCD3Q96EY7 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
PTCD3Q96EY7 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
PTCD3Q96EY7 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
PTCD3Q96EY7 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
PTCD3Q96EY7 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC25.84■■□□□ 1.73
PTCD3Q96EY7 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC25.83■■□□□ 1.73
PTCD3Q96EY7 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC25.83■■□□□ 1.73
PTCD3Q96EY7 AL135925.1-201ENST00000605920 1701 ntBASIC25.83■■□□□ 1.72
PTCD3Q96EY7 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC25.83■■□□□ 1.72
PTCD3Q96EY7 AL121749.1-202ENST00000609313 2153 ntBASIC25.82■■□□□ 1.72
PTCD3Q96EY7 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
PTCD3Q96EY7 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC25.82■■□□□ 1.72
PTCD3Q96EY7 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC25.82■■□□□ 1.72
PTCD3Q96EY7 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
PTCD3Q96EY7 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
PTCD3Q96EY7 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
PTCD3Q96EY7 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
PTCD3Q96EY7 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
PTCD3Q96EY7 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC25.81■■□□□ 1.72
PTCD3Q96EY7 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
PTCD3Q96EY7 AC097358.2-201ENST00000607541 1159 ntBASIC25.8■■□□□ 1.72
PTCD3Q96EY7 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
PTCD3Q96EY7 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
PTCD3Q96EY7 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
PTCD3Q96EY7 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
PTCD3Q96EY7 AC136428.2-201ENST00000563187 214 ntBASIC25.79■■□□□ 1.72
PTCD3Q96EY7 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC25.78■■□□□ 1.72
PTCD3Q96EY7 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
PTCD3Q96EY7 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
PTCD3Q96EY7 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
PTCD3Q96EY7 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
PTCD3Q96EY7 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC25.77■■□□□ 1.72
PTCD3Q96EY7 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC25.77■■□□□ 1.72
PTCD3Q96EY7 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC25.77■■□□□ 1.72
PTCD3Q96EY7 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
PTCD3Q96EY7 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
PTCD3Q96EY7 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC25.75■■□□□ 1.71
PTCD3Q96EY7 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC25.75■■□□□ 1.71
PTCD3Q96EY7 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
PTCD3Q96EY7 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC25.74■■□□□ 1.71
PTCD3Q96EY7 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
PTCD3Q96EY7 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
PTCD3Q96EY7 AL391121.1-201ENST00000607967 1349 ntBASIC25.74■■□□□ 1.71
PTCD3Q96EY7 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC25.74■■□□□ 1.71
PTCD3Q96EY7 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC25.73■■□□□ 1.71
PTCD3Q96EY7 DRD5P2-201ENST00000421395 2012 ntBASIC25.72■■□□□ 1.71
PTCD3Q96EY7 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
PTCD3Q96EY7 CAHM-201ENST00000604200 896 ntBASIC25.72■■□□□ 1.71
PTCD3Q96EY7 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC25.72■■□□□ 1.71
PTCD3Q96EY7 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC25.72■■□□□ 1.71
PTCD3Q96EY7 AC135731.1-201ENST00000569415 2548 ntBASIC25.72■■□□□ 1.71
PTCD3Q96EY7 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC25.71■■□□□ 1.71
PTCD3Q96EY7 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
PTCD3Q96EY7 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC25.71■■□□□ 1.71
PTCD3Q96EY7 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
PTCD3Q96EY7 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.71
PTCD3Q96EY7 EBPL-202ENST00000378268 680 ntTSL 3 BASIC25.7■■□□□ 1.7
PTCD3Q96EY7 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC25.7■■□□□ 1.7
PTCD3Q96EY7 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC25.7■■□□□ 1.7
PTCD3Q96EY7 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
PTCD3Q96EY7 CREM-210ENST00000374721 2020 ntTSL 5 BASIC25.68■■□□□ 1.7
PTCD3Q96EY7 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
PTCD3Q96EY7 SHF-207ENST00000560540 2062 ntTSL 5 BASIC25.68■■□□□ 1.7
PTCD3Q96EY7 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC25.68■■□□□ 1.7
PTCD3Q96EY7 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC25.67■■□□□ 1.7
PTCD3Q96EY7 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC25.67■■□□□ 1.7
PTCD3Q96EY7 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
PTCD3Q96EY7 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
Retrieved 100 of 98,524 protein–RNA pairs in 16.1 ms