Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 MIR3648-1-201ENST00000615959 180 ntBASIC25.89■■□□□ 1.74
LMX1AQ8TE12 GDI1-215ENST00000630693 786 ntTSL 4 BASIC25.89■■□□□ 1.74
LMX1AQ8TE12 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
LMX1AQ8TE12 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC25.88■■□□□ 1.73
LMX1AQ8TE12 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
LMX1AQ8TE12 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC25.88■■□□□ 1.73
LMX1AQ8TE12 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC25.88■■□□□ 1.73
LMX1AQ8TE12 AC016575.1-201ENST00000607026 382 ntBASIC25.88■■□□□ 1.73
LMX1AQ8TE12 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
LMX1AQ8TE12 MIR639-201ENST00000384974 98 ntBASIC25.87■■□□□ 1.73
LMX1AQ8TE12 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
LMX1AQ8TE12 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
LMX1AQ8TE12 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
LMX1AQ8TE12 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
LMX1AQ8TE12 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC25.86■■□□□ 1.73
LMX1AQ8TE12 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC25.86■■□□□ 1.73
LMX1AQ8TE12 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC25.85■■□□□ 1.73
LMX1AQ8TE12 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
LMX1AQ8TE12 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC25.85■■□□□ 1.73
LMX1AQ8TE12 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC25.85■■□□□ 1.73
LMX1AQ8TE12 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC25.84■■□□□ 1.73
LMX1AQ8TE12 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
LMX1AQ8TE12 EI24-212ENST00000615917 1407 ntTSL 2 BASIC25.83■■□□□ 1.73
LMX1AQ8TE12 AGPS-202ENST00000409888 815 ntTSL 4 BASIC25.83■■□□□ 1.73
LMX1AQ8TE12 MIR4449-201ENST00000578365 66 ntBASIC25.83■■□□□ 1.73
LMX1AQ8TE12 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
LMX1AQ8TE12 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
LMX1AQ8TE12 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
LMX1AQ8TE12 CR559946.2-201ENST00000623684 991 ntBASIC25.82■■□□□ 1.72
LMX1AQ8TE12 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
LMX1AQ8TE12 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC25.81■■□□□ 1.72
LMX1AQ8TE12 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC25.81■■□□□ 1.72
LMX1AQ8TE12 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
LMX1AQ8TE12 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC25.79■■□□□ 1.72
LMX1AQ8TE12 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC25.79■■□□□ 1.72
LMX1AQ8TE12 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
LMX1AQ8TE12 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC25.74■■□□□ 1.71
LMX1AQ8TE12 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
LMX1AQ8TE12 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
LMX1AQ8TE12 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC25.72■■□□□ 1.71
LMX1AQ8TE12 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC25.72■■□□□ 1.71
LMX1AQ8TE12 CALM3-209ENST00000597743 577 ntTSL 4 BASIC25.72■■□□□ 1.71
LMX1AQ8TE12 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC25.72■■□□□ 1.71
LMX1AQ8TE12 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
LMX1AQ8TE12 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC25.7■■□□□ 1.71
LMX1AQ8TE12 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC25.7■■□□□ 1.71
LMX1AQ8TE12 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
LMX1AQ8TE12 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC25.7■■□□□ 1.7
LMX1AQ8TE12 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
LMX1AQ8TE12 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
LMX1AQ8TE12 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
LMX1AQ8TE12 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
LMX1AQ8TE12 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
LMX1AQ8TE12 DUX4L13-201ENST00000554103 1267 ntBASIC25.69■■□□□ 1.7
LMX1AQ8TE12 DUX4L15-201ENST00000611059 1267 ntBASIC25.69■■□□□ 1.7
LMX1AQ8TE12 DUX4L23-201ENST00000615195 1269 ntBASIC25.69■■□□□ 1.7
LMX1AQ8TE12 DUX4L24-201ENST00000617576 1269 ntBASIC25.69■■□□□ 1.7
LMX1AQ8TE12 DUX4L22-201ENST00000618238 1269 ntBASIC25.69■■□□□ 1.7
LMX1AQ8TE12 DUX4L20-201ENST00000619712 1269 ntBASIC25.69■■□□□ 1.7
LMX1AQ8TE12 DUX4L21-201ENST00000622058 1269 ntBASIC25.69■■□□□ 1.7
LMX1AQ8TE12 DUX4L10-201ENST00000622460 1267 ntBASIC25.69■■□□□ 1.7
LMX1AQ8TE12 DUX4L25-201ENST00000624915 1269 ntBASIC25.69■■□□□ 1.7
LMX1AQ8TE12 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC25.68■■□□□ 1.7
LMX1AQ8TE12 AC010864.1-201ENST00000609407 1511 ntBASIC25.68■■□□□ 1.7
LMX1AQ8TE12 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC25.67■■□□□ 1.7
LMX1AQ8TE12 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC25.67■■□□□ 1.7
LMX1AQ8TE12 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC25.67■■□□□ 1.7
LMX1AQ8TE12 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC25.67■■□□□ 1.7
LMX1AQ8TE12 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
LMX1AQ8TE12 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
LMX1AQ8TE12 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
LMX1AQ8TE12 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
LMX1AQ8TE12 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC25.65■■□□□ 1.7
LMX1AQ8TE12 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC25.64■■□□□ 1.7
LMX1AQ8TE12 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
LMX1AQ8TE12 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC25.64■■□□□ 1.7
LMX1AQ8TE12 CHML-204ENST00000638121 920 ntTSL 2 BASIC25.64■■□□□ 1.7
LMX1AQ8TE12 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
LMX1AQ8TE12 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
LMX1AQ8TE12 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC25.63■■□□□ 1.69
LMX1AQ8TE12 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC25.63■■□□□ 1.69
LMX1AQ8TE12 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
LMX1AQ8TE12 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
LMX1AQ8TE12 HES6-205ENST00000409356 528 ntTSL 2 BASIC25.62■■□□□ 1.69
LMX1AQ8TE12 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC25.62■■□□□ 1.69
LMX1AQ8TE12 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
LMX1AQ8TE12 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
LMX1AQ8TE12 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC25.61■■□□□ 1.69
LMX1AQ8TE12 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC25.6■■□□□ 1.69
LMX1AQ8TE12 METRNL-202ENST00000570778 967 ntTSL 5 BASIC25.6■■□□□ 1.69
LMX1AQ8TE12 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
LMX1AQ8TE12 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC25.59■■□□□ 1.69
LMX1AQ8TE12 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC25.59■■□□□ 1.69
LMX1AQ8TE12 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
LMX1AQ8TE12 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
LMX1AQ8TE12 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
LMX1AQ8TE12 LINC00273-201ENST00000539813 1452 ntBASIC25.56■■□□□ 1.68
LMX1AQ8TE12 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC25.56■■□□□ 1.68
LMX1AQ8TE12 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC25.56■■□□□ 1.68
LMX1AQ8TE12 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC25.56■■□□□ 1.68
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms