Protein–RNA interactions for Protein: P83369

LSM11, U7 snRNA-associated Sm-like protein LSm11, humanhuman

Known RBP eCLIP

Length 360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM11P83369 NUDT3-201ENST00000607016 9905 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.461e-6■■■■■ 42.8
LSM11P83369 SRBD1-203ENST00000475073 567 ntTSL 49.45□□□□□ -0.92e-10■■■■■ 42.8
LSM11P83369 CDC25A-203ENST00000437972 730 ntTSL 325.79■■□□□ 1.728e-10■■■■■ 42.4
LSM11P83369 MAGI1-205ENST00000464060 2247 ntTSL 1 (best)22.19■■□□□ 1.148e-10■■■■■ 42.4
LSM11P83369 SH3BP5-208ENST00000459627 473 ntTSL 320.86■□□□□ 0.938e-10■■■■■ 42.4
LSM11P83369 SH3BP5-204ENST00000412806 1900 ntTSL 520.06■□□□□ 0.88e-10■■■■■ 42.4
LSM11P83369 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC16.2■□□□□ 0.188e-10■■■■■ 42.4
LSM11P83369 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.138e-10■■■■■ 42.4
LSM11P83369 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC15.68■□□□□ 0.18e-10■■■■■ 42.4
LSM11P83369 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.028e-10■■■■■ 42.4
LSM11P83369 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC15.11■□□□□ 0.018e-10■■■■■ 42.4
LSM11P83369 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.038e-10■■■■■ 42.4
LSM11P83369 SH3BP5-207ENST00000450625 763 ntTSL 314.49□□□□□ -0.098e-10■■■■■ 42.4
LSM11P83369 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.228e-10■■■■■ 42.4
LSM11P83369 MAGI1-203ENST00000460329 3694 ntTSL 513.09□□□□□ -0.318e-10■■■■■ 42.4
LSM11P83369 SART3-208ENST00000547528 1935 ntTSL 1 (best)13.03□□□□□ -0.328e-10■■■■■ 42.4
LSM11P83369 MAGI1-204ENST00000463103 4193 ntTSL 512.33□□□□□ -0.438e-10■■■■■ 42.4
LSM11P83369 MAGI1-218ENST00000621418 6225 ntTSL 1 (best) BASIC12.32□□□□□ -0.448e-10■■■■■ 42.4
LSM11P83369 SH3BP5-209ENST00000465894 532 ntTSL 512.17□□□□□ -0.468e-10■■■■■ 42.4
LSM11P83369 ZFYVE16-213ENST00000513789 423 ntTSL 311.85□□□□□ -0.518e-10■■■■■ 42.4
LSM11P83369 SART3-206ENST00000546815 2318 ntTSL 511.59□□□□□ -0.558e-10■■■■■ 42.4
LSM11P83369 MAGI1-217ENST00000611645 6398 ntTSL 1 (best) BASIC11.45□□□□□ -0.588e-10■■■■■ 42.4
LSM11P83369 SART3-202ENST00000431469 2834 ntTSL 1 (best) BASIC11.16□□□□□ -0.628e-10■■■■■ 42.4
LSM11P83369 SART3-201ENST00000228284 4004 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.918e-10■■■■■ 42.4
LSM11P83369 SART3-209ENST00000548077 625 ntTSL 28.47□□□□□ -1.058e-10■■■■■ 42.4
LSM11P83369 SART3-204ENST00000546728 3637 ntTSL 1 (best)8.07□□□□□ -1.128e-10■■■■■ 42.4
LSM11P83369 MAGI1-207ENST00000470990 2138 ntTSL 1 (best)7.51□□□□□ -1.218e-10■■■■■ 42.4
LSM11P83369 AGO1-202ENST00000373206 3996 ntTSL 2 BASIC6.93□□□□□ -1.38e-10■■■■■ 42.4
LSM11P83369 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.528e-10■■■■■ 42.4
LSM11P83369 SART3-205ENST00000546808 405 ntTSL 54.97□□□□□ -1.618e-10■■■■■ 42.4
LSM11P83369 ZFYVE16-212ENST00000512907 5143 ntTSL 24.71□□□□□ -1.668e-10■■■■■ 42.4
LSM11P83369 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.798e-10■■■■■ 42.4
LSM11P83369 ZFYVE16-209ENST00000511829 3794 ntTSL 23.76□□□□□ -1.818e-10■■■■■ 42.4
LSM11P83369 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.898e-10■■■■■ 42.4
LSM11P83369 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.391e-22■■■■■ 42.2
LSM11P83369 RHOBTB3-207ENST00000506959 547 ntTSL 511.48□□□□□ -0.571e-22■■■■■ 42.2
LSM11P83369 RHOBTB3-209ENST00000510226 560 ntTSL 411.48□□□□□ -0.571e-22■■■■■ 42.2
LSM11P83369 RHOBTB3-213ENST00000512878 483 ntTSL 211.09□□□□□ -0.631e-22■■■■■ 42.2
LSM11P83369 RHOBTB3-205ENST00000504949 1511 ntTSL 210.74□□□□□ -0.691e-22■■■■■ 42.2
LSM11P83369 RHOBTB3-211ENST00000510623 333 ntTSL 26.38□□□□□ -1.391e-22■■■■■ 42.2
LSM11P83369 EP400-204ENST00000389561 12317 ntAPPRIS P1 TSL 5 BASIC8.17□□□□□ -1.11e-76■■■■■ 42.2
LSM11P83369 EP400-205ENST00000389562 12836 ntAPPRIS P1 TSL 1 (best) BASIC8.12□□□□□ -1.111e-76■■■■■ 42.2
LSM11P83369 TMBIM1-202ENST00000396809 2422 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.364e-18■■■■■ 41.5
LSM11P83369 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.364e-18■■■■■ 41.5
LSM11P83369 TMBIM1-219ENST00000465082 2874 ntTSL 212.12□□□□□ -0.474e-18■■■■■ 41.5
LSM11P83369 TMBIM1-214ENST00000444881 2936 ntAPPRIS P1 TSL 2 BASIC10.89□□□□□ -0.674e-18■■■■■ 41.5
LSM11P83369 TMBIM1-209ENST00000437694 992 ntTSL 29.38□□□□□ -0.914e-18■■■■■ 41.5
LSM11P83369 TMBIM1-215ENST00000445635 1251 ntTSL 2 BASIC8.91□□□□□ -0.984e-18■■■■■ 41.5
LSM11P83369 RANGAP1-201ENST00000356244 3060 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.532e-11■■■■■ 41.1
LSM11P83369 RANGAP1-202ENST00000405486 3469 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.692e-11■■■■■ 41.1
LSM11P83369 RANGAP1-207ENST00000455915 4222 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.912e-11■■■■■ 41.1
LSM11P83369 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC17.61■□□□□ 0.418e-10■■■■■ 40.8
LSM11P83369 NDUFV3-203ENST00000460259 2029 ntTSL 213.69□□□□□ -0.228e-10■■■■■ 40.8
LSM11P83369 NDUFV3-201ENST00000340344 4676 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.068e-10■■■■■ 40.8
LSM11P83369 TBCD-210ENST00000572953 702 ntTSL 510.13□□□□□ -0.791e-7■■■■■ 40.6
LSM11P83369 CPNE7-208ENST00000566398 672 ntTSL 316.44■□□□□ 0.223e-7■■■■■ 40.6
LSM11P83369 CPNE7-204ENST00000526232 488 ntTSL 315.61■□□□□ 0.093e-7■■■■■ 40.6
LSM11P83369 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC23.58■■□□□ 1.372e-9■■■■■ 40.5
LSM11P83369 TJP1-210ENST00000558447 720 ntTSL 322.98■■□□□ 1.272e-9■■■■■ 40.5
LSM11P83369 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.082e-9■■■■■ 40.5
LSM11P83369 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.012e-9■■■■■ 40.5
LSM11P83369 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC18.45■□□□□ 0.542e-9■■■■■ 40.5
LSM11P83369 HS1BP3-205ENST00000445102 2005 ntTSL 215.26■□□□□ 0.032e-9■■■■■ 40.5
LSM11P83369 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0.012e-9■■■■■ 40.5
LSM11P83369 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC14.63□□□□□ -0.072e-9■■■■■ 40.5
LSM11P83369 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.082e-9■■■■■ 40.5
LSM11P83369 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC14.36□□□□□ -0.112e-9■■■■■ 40.5
LSM11P83369 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.142e-9■■■■■ 40.5
LSM11P83369 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.222e-9■■■■■ 40.5
LSM11P83369 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC13.64□□□□□ -0.231e-17■■■■■ 40.5
LSM11P83369 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.272e-9■■■■■ 40.5
LSM11P83369 ATG2A-202ENST00000418259 5654 ntTSL 513.33□□□□□ -0.272e-9■■■■■ 40.5
LSM11P83369 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.291e-17■■■■■ 40.5
LSM11P83369 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.341e-17■■■■■ 40.5
LSM11P83369 HS1BP3-206ENST00000446825 841 ntTSL 312.76□□□□□ -0.372e-9■■■■■ 40.5
LSM11P83369 HS1BP3-207ENST00000458740 518 ntTSL 212.33□□□□□ -0.442e-9■■■■■ 40.5
LSM11P83369 SPIRE1-207ENST00000462226 536 ntTSL 412□□□□□ -0.492e-9■■■■■ 40.5
LSM11P83369 MROH1-211ENST00000544576 3673 ntTSL 1 (best) BASIC11.2□□□□□ -0.621e-17■■■■■ 40.5
LSM11P83369 HS1BP3-204ENST00000415264 414 ntTSL 310.35□□□□□ -0.752e-9■■■■■ 40.5
LSM11P83369 CGGBP1-203ENST00000462901 1063 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.772e-9■■■■■ 40.5
LSM11P83369 CGGBP1-204ENST00000467332 556 ntTSL 49.92□□□□□ -0.822e-9■■■■■ 40.5
LSM11P83369 TJP1-206ENST00000473741 270 ntTSL 28.6□□□□□ -1.032e-9■■■■■ 40.5
LSM11P83369 SPIRE1-205ENST00000449797 701 ntTSL 38.11□□□□□ -1.112e-9■■■■■ 40.5
LSM11P83369 SPIRE1-204ENST00000440472 2109 ntTSL 1 (best)7.61□□□□□ -1.192e-9■■■■■ 40.5
LSM11P83369 SPIRE1-210ENST00000497844 546 ntTSL 57.36□□□□□ -1.232e-9■■■■■ 40.5
LSM11P83369 CDKAL1-201ENST00000274695 3272 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.352e-9■■■■■ 40.5
LSM11P83369 SPIRE1-206ENST00000453447 2107 ntTSL 5 BASIC6.53□□□□□ -1.362e-9■■■■■ 40.5
LSM11P83369 CDKAL1-202ENST00000378610 3115 ntAPPRIS P1 TSL 2 BASIC6.34□□□□□ -1.392e-9■■■■■ 40.5
LSM11P83369 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC4.96□□□□□ -1.612e-9■■■■■ 40.5
LSM11P83369 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC4.67□□□□□ -1.662e-9■■■■■ 40.5
LSM11P83369 BMP2K-203ENST00000502613 6902 ntTSL 1 (best)4.52□□□□□ -1.692e-9■■■■■ 40.5
LSM11P83369 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.82e-9■■■■■ 40.5
LSM11P83369 CHST11-204ENST00000549016 573 ntTSL 410.41□□□□□ -0.744e-13■■■■■ 40.4
LSM11P83369 TNK2-220ENST00000486523 300 ntTSL 317.99■□□□□ 0.473e-11■■■■■ 40.1
LSM11P83369 TNK2-212ENST00000439230 2331 ntTSL 1 (best)17.3■□□□□ 0.363e-11■■■■■ 40.1
LSM11P83369 TNK2-207ENST00000427576 541 ntTSL 317.11■□□□□ 0.333e-11■■■■■ 40.1
LSM11P83369 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC13.27□□□□□ -0.293e-11■■■■■ 40.1
LSM11P83369 RAD54B-205ENST00000518998 599 ntTSL 310.07□□□□□ -0.82e-7■■■■■ 40
LSM11P83369 RAD54B-208ENST00000523839 472 ntTSL 37.93□□□□□ -1.142e-7■■■■■ 40
LSM11P83369 RAD54B-203ENST00000463267 1699 ntTSL 1 (best)7.52□□□□□ -1.212e-7■■■■■ 40
Retrieved 100 of 11,495 protein–RNA pairs in 357.9 ms