Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC24.1■■□□□ 1.45
RFC3P40938 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
RFC3P40938 MBP-237ENST00000579129 1052 ntTSL 5 BASIC24.1■■□□□ 1.45
RFC3P40938 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC24.1■■□□□ 1.45
RFC3P40938 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
RFC3P40938 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC24.09■■□□□ 1.45
RFC3P40938 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
RFC3P40938 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC24.08■■□□□ 1.45
RFC3P40938 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC24.08■■□□□ 1.44
RFC3P40938 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC24.07■■□□□ 1.44
RFC3P40938 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
RFC3P40938 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
RFC3P40938 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
RFC3P40938 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC24.06■■□□□ 1.44
RFC3P40938 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC24.06■■□□□ 1.44
RFC3P40938 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC24.06■■□□□ 1.44
RFC3P40938 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
RFC3P40938 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC24.05■■□□□ 1.44
RFC3P40938 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC24.05■■□□□ 1.44
RFC3P40938 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC24.05■■□□□ 1.44
RFC3P40938 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
RFC3P40938 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
RFC3P40938 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
RFC3P40938 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC24.02■■□□□ 1.44
RFC3P40938 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
RFC3P40938 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC24.01■■□□□ 1.43
RFC3P40938 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC24.01■■□□□ 1.43
RFC3P40938 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
RFC3P40938 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
RFC3P40938 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC24■■□□□ 1.43
RFC3P40938 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
RFC3P40938 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC23.99■■□□□ 1.43
RFC3P40938 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC23.99■■□□□ 1.43
RFC3P40938 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
RFC3P40938 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC23.98■■□□□ 1.43
RFC3P40938 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
RFC3P40938 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
RFC3P40938 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
RFC3P40938 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
RFC3P40938 RPS2-202ENST00000526522 924 ntTSL 2 BASIC23.95■■□□□ 1.42
RFC3P40938 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC23.95■■□□□ 1.42
RFC3P40938 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC23.95■■□□□ 1.42
RFC3P40938 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC23.94■■□□□ 1.42
RFC3P40938 RNF166-209ENST00000567844 633 ntTSL 5 BASIC23.94■■□□□ 1.42
RFC3P40938 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
RFC3P40938 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
RFC3P40938 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
RFC3P40938 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC23.92■■□□□ 1.42
RFC3P40938 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
RFC3P40938 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC23.92■■□□□ 1.42
RFC3P40938 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC23.91■■□□□ 1.42
RFC3P40938 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC23.91■■□□□ 1.42
RFC3P40938 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
RFC3P40938 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
RFC3P40938 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
RFC3P40938 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC23.9■■□□□ 1.42
RFC3P40938 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC23.9■■□□□ 1.42
RFC3P40938 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
RFC3P40938 AC010864.1-201ENST00000609407 1511 ntBASIC23.89■■□□□ 1.41
RFC3P40938 DUX4L11-201ENST00000611504 1267 ntBASIC23.88■■□□□ 1.41
RFC3P40938 DUX4L12-201ENST00000614593 1267 ntBASIC23.88■■□□□ 1.41
RFC3P40938 LINC01971-201ENST00000617888 1048 ntBASIC23.88■■□□□ 1.41
RFC3P40938 DUX4L14-201ENST00000621227 1267 ntBASIC23.88■■□□□ 1.41
RFC3P40938 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC23.88■■□□□ 1.41
RFC3P40938 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
RFC3P40938 EI24-212ENST00000615917 1407 ntTSL 2 BASIC23.87■■□□□ 1.41
RFC3P40938 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
RFC3P40938 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
RFC3P40938 AC016575.1-201ENST00000607026 382 ntBASIC23.86■■□□□ 1.41
RFC3P40938 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC23.85■■□□□ 1.41
RFC3P40938 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC23.85■■□□□ 1.41
RFC3P40938 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
RFC3P40938 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC23.84■■□□□ 1.41
RFC3P40938 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
RFC3P40938 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC23.84■■□□□ 1.41
RFC3P40938 GDI1-215ENST00000630693 786 ntTSL 4 BASIC23.84■■□□□ 1.41
RFC3P40938 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC23.83■■□□□ 1.41
RFC3P40938 MACF1-219ENST00000484793 834 ntTSL 2 BASIC23.83■■□□□ 1.41
RFC3P40938 MIR3648-2-201ENST00000581792 180 ntBASIC23.83■■□□□ 1.41
RFC3P40938 MIR3648-1-201ENST00000615959 180 ntBASIC23.83■■□□□ 1.41
RFC3P40938 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC23.82■■□□□ 1.4
RFC3P40938 CR559946.2-201ENST00000623684 991 ntBASIC23.82■■□□□ 1.4
RFC3P40938 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
RFC3P40938 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC23.81■■□□□ 1.4
RFC3P40938 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC23.81■■□□□ 1.4
RFC3P40938 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
RFC3P40938 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
RFC3P40938 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
RFC3P40938 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC23.79■■□□□ 1.4
RFC3P40938 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
RFC3P40938 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC23.79■■□□□ 1.4
RFC3P40938 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
RFC3P40938 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
RFC3P40938 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
RFC3P40938 MIR639-201ENST00000384974 98 ntBASIC23.77■■□□□ 1.4
RFC3P40938 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC23.77■■□□□ 1.4
RFC3P40938 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC23.77■■□□□ 1.4
RFC3P40938 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC23.76■■□□□ 1.39
RFC3P40938 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC23.76■■□□□ 1.39
RFC3P40938 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 14.7 ms