Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC32.56■■■□□ 2.8
COL4A5P29400 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC32.56■■■□□ 2.8
COL4A5P29400 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC32.56■■■□□ 2.8
COL4A5P29400 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC32.56■■■□□ 2.8
COL4A5P29400 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC32.55■■■□□ 2.8
COL4A5P29400 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC32.54■■■□□ 2.8
COL4A5P29400 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC32.54■■■□□ 2.8
COL4A5P29400 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC32.54■■■□□ 2.8
COL4A5P29400 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC32.54■■■□□ 2.8
COL4A5P29400 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC32.53■■■□□ 2.8
COL4A5P29400 SRP68-213ENST00000629930 165 ntTSL 5 BASIC32.53■■■□□ 2.8
COL4A5P29400 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
COL4A5P29400 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC32.53■■■□□ 2.8
COL4A5P29400 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC32.51■■■□□ 2.8
COL4A5P29400 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC32.5■■■□□ 2.79
COL4A5P29400 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC32.49■■■□□ 2.79
COL4A5P29400 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC32.48■■■□□ 2.79
COL4A5P29400 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC32.48■■■□□ 2.79
COL4A5P29400 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC32.48■■■□□ 2.79
COL4A5P29400 HES6-205ENST00000409356 528 ntTSL 2 BASIC32.48■■■□□ 2.79
COL4A5P29400 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC32.48■■■□□ 2.79
COL4A5P29400 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC32.48■■■□□ 2.79
COL4A5P29400 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC32.46■■■□□ 2.79
COL4A5P29400 RARRES2P2-201ENST00000394842 485 ntBASIC32.44■■■□□ 2.78
COL4A5P29400 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC32.44■■■□□ 2.78
COL4A5P29400 CHML-204ENST00000638121 920 ntTSL 2 BASIC32.43■■■□□ 2.78
COL4A5P29400 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC32.43■■■□□ 2.78
COL4A5P29400 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC32.42■■■□□ 2.78
COL4A5P29400 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC32.42■■■□□ 2.78
COL4A5P29400 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC32.4■■■□□ 2.78
COL4A5P29400 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC32.39■■■□□ 2.78
COL4A5P29400 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.78
COL4A5P29400 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC32.38■■■□□ 2.77
COL4A5P29400 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC32.38■■■□□ 2.77
COL4A5P29400 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC32.37■■■□□ 2.77
COL4A5P29400 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC32.37■■■□□ 2.77
COL4A5P29400 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC32.36■■■□□ 2.77
COL4A5P29400 EI24-212ENST00000615917 1407 ntTSL 2 BASIC32.36■■■□□ 2.77
COL4A5P29400 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC32.36■■■□□ 2.77
COL4A5P29400 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC32.35■■■□□ 2.77
COL4A5P29400 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC32.35■■■□□ 2.77
COL4A5P29400 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC32.34■■■□□ 2.77
COL4A5P29400 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC32.34■■■□□ 2.77
COL4A5P29400 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC32.34■■■□□ 2.77
COL4A5P29400 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC32.34■■■□□ 2.77
COL4A5P29400 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC32.34■■■□□ 2.77
COL4A5P29400 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC32.34■■■□□ 2.77
COL4A5P29400 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC32.34■■■□□ 2.77
COL4A5P29400 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC32.34■■■□□ 2.77
COL4A5P29400 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC32.34■■■□□ 2.77
COL4A5P29400 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC32.34■■■□□ 2.77
COL4A5P29400 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC32.34■■■□□ 2.77
COL4A5P29400 ABHD17AP5-201ENST00000580133 923 ntBASIC32.34■■■□□ 2.77
COL4A5P29400 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC32.33■■■□□ 2.77
COL4A5P29400 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC32.32■■■□□ 2.77
COL4A5P29400 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC32.32■■■□□ 2.76
COL4A5P29400 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.76
COL4A5P29400 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC32.3■■■□□ 2.76
COL4A5P29400 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC32.29■■■□□ 2.76
COL4A5P29400 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC32.29■■■□□ 2.76
COL4A5P29400 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
COL4A5P29400 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC32.29■■■□□ 2.76
COL4A5P29400 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
COL4A5P29400 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC32.28■■■□□ 2.76
COL4A5P29400 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC32.27■■■□□ 2.76
COL4A5P29400 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC32.27■■■□□ 2.76
COL4A5P29400 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC32.26■■■□□ 2.75
COL4A5P29400 GPX1-201ENST00000419349 1106 ntBASIC32.26■■■□□ 2.75
COL4A5P29400 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC32.25■■■□□ 2.75
COL4A5P29400 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC32.25■■■□□ 2.75
COL4A5P29400 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC32.25■■■□□ 2.75
COL4A5P29400 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC32.25■■■□□ 2.75
COL4A5P29400 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC32.24■■■□□ 2.75
COL4A5P29400 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC32.24■■■□□ 2.75
COL4A5P29400 AC120057.4-201ENST00000624722 1615 ntBASIC32.24■■■□□ 2.75
COL4A5P29400 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC32.21■■■□□ 2.75
COL4A5P29400 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC32.21■■■□□ 2.75
COL4A5P29400 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC32.21■■■□□ 2.75
COL4A5P29400 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC32.2■■■□□ 2.75
COL4A5P29400 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC32.19■■■□□ 2.74
COL4A5P29400 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC32.19■■■□□ 2.74
COL4A5P29400 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC32.19■■■□□ 2.74
COL4A5P29400 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC32.18■■■□□ 2.74
COL4A5P29400 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC32.18■■■□□ 2.74
COL4A5P29400 CHST11-202ENST00000546689 756 ntTSL 2 BASIC32.17■■■□□ 2.74
COL4A5P29400 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC32.16■■■□□ 2.74
COL4A5P29400 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC32.15■■■□□ 2.74
COL4A5P29400 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC32.15■■■□□ 2.74
COL4A5P29400 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC32.15■■■□□ 2.74
COL4A5P29400 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC32.14■■■□□ 2.74
COL4A5P29400 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC32.14■■■□□ 2.74
COL4A5P29400 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC32.13■■■□□ 2.73
COL4A5P29400 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC32.13■■■□□ 2.73
COL4A5P29400 RNF126P1-201ENST00000567452 1320 ntBASIC32.12■■■□□ 2.73
COL4A5P29400 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC32.11■■■□□ 2.73
COL4A5P29400 LINC00273-201ENST00000539813 1452 ntBASIC32.1■■■□□ 2.73
COL4A5P29400 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC32.09■■■□□ 2.73
COL4A5P29400 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC32.09■■■□□ 2.73
COL4A5P29400 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC32.09■■■□□ 2.73
COL4A5P29400 TPT1-202ENST00000379055 948 ntTSL 2 BASIC32.08■■■□□ 2.73
Retrieved 100 of 98,524 protein–RNA pairs in 16.4 ms