Protein–RNA interactions for Protein: Q9UGM1

CHRNA9, Neuronal acetylcholine receptor subunit alpha-9, humanhuman

Predictions only

Length 479 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA9Q9UGM1 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
CHRNA9Q9UGM1 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHRNA9Q9UGM1 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHRNA9Q9UGM1 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHRNA9Q9UGM1 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC18.66■□□□□ 0.58
CHRNA9Q9UGM1 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CHRNA9Q9UGM1 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHRNA9Q9UGM1 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHRNA9Q9UGM1 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC18.66■□□□□ 0.58
CHRNA9Q9UGM1 AC007225.1-201ENST00000566331 1836 ntBASIC18.66■□□□□ 0.58
CHRNA9Q9UGM1 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHRNA9Q9UGM1 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHRNA9Q9UGM1 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHRNA9Q9UGM1 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CHRNA9Q9UGM1 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC18.66■□□□□ 0.58
CHRNA9Q9UGM1 UQCRFS1P1-201ENST00000435169 820 ntBASIC18.66■□□□□ 0.58
CHRNA9Q9UGM1 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC18.66■□□□□ 0.58
CHRNA9Q9UGM1 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC18.66■□□□□ 0.58
CHRNA9Q9UGM1 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
CHRNA9Q9UGM1 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC18.66■□□□□ 0.58
CHRNA9Q9UGM1 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHRNA9Q9UGM1 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHRNA9Q9UGM1 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CHRNA9Q9UGM1 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHRNA9Q9UGM1 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHRNA9Q9UGM1 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHRNA9Q9UGM1 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC18.65■□□□□ 0.58
CHRNA9Q9UGM1 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC18.65■□□□□ 0.58
CHRNA9Q9UGM1 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
CHRNA9Q9UGM1 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHRNA9Q9UGM1 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHRNA9Q9UGM1 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC18.65■□□□□ 0.58
CHRNA9Q9UGM1 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHRNA9Q9UGM1 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHRNA9Q9UGM1 CDV3P1-201ENST00000471403 739 ntBASIC18.65■□□□□ 0.58
CHRNA9Q9UGM1 AC007322.4-201ENST00000509611 723 ntBASIC18.65■□□□□ 0.58
CHRNA9Q9UGM1 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC18.65■□□□□ 0.58
CHRNA9Q9UGM1 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC18.65■□□□□ 0.58
CHRNA9Q9UGM1 AL137784.2-201ENST00000607332 1000 ntBASIC18.65■□□□□ 0.58
CHRNA9Q9UGM1 IKBKGP1-201ENST00000612193 1073 ntBASIC18.65■□□□□ 0.58
CHRNA9Q9UGM1 AC092437.1-201ENST00000624794 1048 ntBASIC18.65■□□□□ 0.58
CHRNA9Q9UGM1 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC18.65■□□□□ 0.58
CHRNA9Q9UGM1 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
CHRNA9Q9UGM1 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHRNA9Q9UGM1 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
CHRNA9Q9UGM1 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHRNA9Q9UGM1 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHRNA9Q9UGM1 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CHRNA9Q9UGM1 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC18.65■□□□□ 0.58
CHRNA9Q9UGM1 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHRNA9Q9UGM1 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
CHRNA9Q9UGM1 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
CHRNA9Q9UGM1 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.58
CHRNA9Q9UGM1 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
CHRNA9Q9UGM1 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
CHRNA9Q9UGM1 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
CHRNA9Q9UGM1 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC18.64■□□□□ 0.57
CHRNA9Q9UGM1 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CHRNA9Q9UGM1 AC027702.1-201ENST00000563810 1770 ntBASIC18.64■□□□□ 0.57
CHRNA9Q9UGM1 AC007322.3-201ENST00000426526 701 ntBASIC18.64■□□□□ 0.57
CHRNA9Q9UGM1 DUX4L16-201ENST00000555130 1264 ntBASIC18.64■□□□□ 0.57
CHRNA9Q9UGM1 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC18.64■□□□□ 0.57
CHRNA9Q9UGM1 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC18.64■□□□□ 0.57
CHRNA9Q9UGM1 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC18.64■□□□□ 0.57
CHRNA9Q9UGM1 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC18.64■□□□□ 0.57
CHRNA9Q9UGM1 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC18.64■□□□□ 0.57
CHRNA9Q9UGM1 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CHRNA9Q9UGM1 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CHRNA9Q9UGM1 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
CHRNA9Q9UGM1 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC18.64■□□□□ 0.57
CHRNA9Q9UGM1 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CHRNA9Q9UGM1 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
CHRNA9Q9UGM1 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHRNA9Q9UGM1 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC18.63■□□□□ 0.57
CHRNA9Q9UGM1 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CHRNA9Q9UGM1 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CHRNA9Q9UGM1 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHRNA9Q9UGM1 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHRNA9Q9UGM1 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHRNA9Q9UGM1 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CHRNA9Q9UGM1 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHRNA9Q9UGM1 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHRNA9Q9UGM1 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CHRNA9Q9UGM1 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC18.63■□□□□ 0.57
CHRNA9Q9UGM1 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHRNA9Q9UGM1 AL591742.1-201ENST00000604433 565 ntBASIC18.63■□□□□ 0.57
CHRNA9Q9UGM1 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHRNA9Q9UGM1 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC18.63■□□□□ 0.57
CHRNA9Q9UGM1 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHRNA9Q9UGM1 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CHRNA9Q9UGM1 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHRNA9Q9UGM1 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHRNA9Q9UGM1 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHRNA9Q9UGM1 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
CHRNA9Q9UGM1 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC18.63■□□□□ 0.57
CHRNA9Q9UGM1 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CHRNA9Q9UGM1 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHRNA9Q9UGM1 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
CHRNA9Q9UGM1 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC18.62■□□□□ 0.57
CHRNA9Q9UGM1 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 63.4 ms