Protein–RNA interactions for Protein: Q9NWW5

CLN6, Ceroid-lipofuscinosis neuronal protein 6, humanhuman

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6Q9NWW5 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
CLN6Q9NWW5 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLN6Q9NWW5 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
CLN6Q9NWW5 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLN6Q9NWW5 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLN6Q9NWW5 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC18.63■□□□□ 0.57
CLN6Q9NWW5 TCF3P1-201ENST00000423021 1937 ntBASIC18.62■□□□□ 0.57
CLN6Q9NWW5 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
CLN6Q9NWW5 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
CLN6Q9NWW5 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
CLN6Q9NWW5 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
CLN6Q9NWW5 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC18.62■□□□□ 0.57
CLN6Q9NWW5 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLN6Q9NWW5 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CLN6Q9NWW5 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC18.62■□□□□ 0.57
CLN6Q9NWW5 TRIR-202ENST00000588213 841 ntTSL 3 BASIC18.62■□□□□ 0.57
CLN6Q9NWW5 AC009237.3-201ENST00000393279 1427 ntBASIC18.62■□□□□ 0.57
CLN6Q9NWW5 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
CLN6Q9NWW5 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLN6Q9NWW5 EXOC3-AS1-202ENST00000623673 1663 ntBASIC18.62■□□□□ 0.57
CLN6Q9NWW5 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLN6Q9NWW5 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLN6Q9NWW5 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLN6Q9NWW5 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLN6Q9NWW5 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC18.62■□□□□ 0.57
CLN6Q9NWW5 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLN6Q9NWW5 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLN6Q9NWW5 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLN6Q9NWW5 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC18.61■□□□□ 0.57
CLN6Q9NWW5 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLN6Q9NWW5 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC18.61■□□□□ 0.57
CLN6Q9NWW5 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
CLN6Q9NWW5 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLN6Q9NWW5 AC018445.3-201ENST00000624177 1945 ntBASIC18.61■□□□□ 0.57
CLN6Q9NWW5 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC18.61■□□□□ 0.57
CLN6Q9NWW5 PXK-203ENST00000383715 1756 ntTSL 5 BASIC18.61■□□□□ 0.57
CLN6Q9NWW5 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLN6Q9NWW5 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
CLN6Q9NWW5 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLN6Q9NWW5 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CLN6Q9NWW5 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC18.61■□□□□ 0.57
CLN6Q9NWW5 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
CLN6Q9NWW5 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLN6Q9NWW5 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLN6Q9NWW5 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
CLN6Q9NWW5 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLN6Q9NWW5 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC18.6■□□□□ 0.57
CLN6Q9NWW5 BX323043.1-201ENST00000641006 1765 ntBASIC18.6■□□□□ 0.57
CLN6Q9NWW5 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLN6Q9NWW5 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLN6Q9NWW5 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC18.6■□□□□ 0.57
CLN6Q9NWW5 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CLN6Q9NWW5 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLN6Q9NWW5 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CLN6Q9NWW5 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC18.6■□□□□ 0.57
CLN6Q9NWW5 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLN6Q9NWW5 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
CLN6Q9NWW5 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CLN6Q9NWW5 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLN6Q9NWW5 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
CLN6Q9NWW5 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
CLN6Q9NWW5 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CLN6Q9NWW5 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLN6Q9NWW5 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLN6Q9NWW5 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC18.6■□□□□ 0.57
CLN6Q9NWW5 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLN6Q9NWW5 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLN6Q9NWW5 AL020996.1-203ENST00000536896 2307 ntBASIC18.6■□□□□ 0.57
CLN6Q9NWW5 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
CLN6Q9NWW5 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC18.59■□□□□ 0.57
CLN6Q9NWW5 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CLN6Q9NWW5 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CLN6Q9NWW5 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC18.59■□□□□ 0.57
CLN6Q9NWW5 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLN6Q9NWW5 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLN6Q9NWW5 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLN6Q9NWW5 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC18.59■□□□□ 0.57
CLN6Q9NWW5 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC18.59■□□□□ 0.57
CLN6Q9NWW5 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLN6Q9NWW5 FXN-202ENST00000396364 980 ntTSL 5 BASIC18.59■□□□□ 0.57
CLN6Q9NWW5 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC18.59■□□□□ 0.57
CLN6Q9NWW5 PTMA-205ENST00000410064 814 ntTSL 2 BASIC18.59■□□□□ 0.57
CLN6Q9NWW5 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC18.59■□□□□ 0.57
CLN6Q9NWW5 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC18.59■□□□□ 0.57
CLN6Q9NWW5 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CLN6Q9NWW5 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC18.59■□□□□ 0.57
CLN6Q9NWW5 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLN6Q9NWW5 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.59■□□□□ 0.57
CLN6Q9NWW5 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
CLN6Q9NWW5 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLN6Q9NWW5 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC18.59■□□□□ 0.57
CLN6Q9NWW5 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLN6Q9NWW5 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CLN6Q9NWW5 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLN6Q9NWW5 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CLN6Q9NWW5 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLN6Q9NWW5 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CLN6Q9NWW5 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
CLN6Q9NWW5 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
CLN6Q9NWW5 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC18.58■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms