Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC20.44■□□□□ 0.86
VPS13AQ96RL7 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
VPS13AQ96RL7 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
VPS13AQ96RL7 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
VPS13AQ96RL7 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
VPS13AQ96RL7 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
VPS13AQ96RL7 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC20.44■□□□□ 0.86
VPS13AQ96RL7 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC20.44■□□□□ 0.86
VPS13AQ96RL7 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC20.44■□□□□ 0.86
VPS13AQ96RL7 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC20.44■□□□□ 0.86
VPS13AQ96RL7 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
VPS13AQ96RL7 MYC-208ENST00000641036 567 ntBASIC20.44■□□□□ 0.86
VPS13AQ96RL7 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC20.44■□□□□ 0.86
VPS13AQ96RL7 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC20.44■□□□□ 0.86
VPS13AQ96RL7 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
VPS13AQ96RL7 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
VPS13AQ96RL7 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
VPS13AQ96RL7 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC20.44■□□□□ 0.86
VPS13AQ96RL7 AC091076.1-201ENST00000610741 619 ntBASIC20.44■□□□□ 0.86
VPS13AQ96RL7 AC110285.5-201ENST00000611501 352 ntBASIC20.44■□□□□ 0.86
VPS13AQ96RL7 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
VPS13AQ96RL7 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
VPS13AQ96RL7 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC20.43■□□□□ 0.86
VPS13AQ96RL7 RPS15-203ENST00000586096 570 ntTSL 2 BASIC20.43■□□□□ 0.86
VPS13AQ96RL7 AL031963.3-201ENST00000606441 850 ntBASIC20.43■□□□□ 0.86
VPS13AQ96RL7 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
VPS13AQ96RL7 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC20.43■□□□□ 0.86
VPS13AQ96RL7 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
VPS13AQ96RL7 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
VPS13AQ96RL7 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
VPS13AQ96RL7 AL390955.1-201ENST00000428694 934 ntBASIC20.43■□□□□ 0.86
VPS13AQ96RL7 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC20.43■□□□□ 0.86
VPS13AQ96RL7 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC20.43■□□□□ 0.86
VPS13AQ96RL7 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC20.43■□□□□ 0.86
VPS13AQ96RL7 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC20.43■□□□□ 0.86
VPS13AQ96RL7 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
VPS13AQ96RL7 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
VPS13AQ96RL7 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
VPS13AQ96RL7 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC20.43■□□□□ 0.86
VPS13AQ96RL7 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC20.42■□□□□ 0.86
VPS13AQ96RL7 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
VPS13AQ96RL7 GUK1-204ENST00000366721 689 ntTSL 3 BASIC20.42■□□□□ 0.86
VPS13AQ96RL7 FAM197Y1-201ENST00000421178 764 ntBASIC20.42■□□□□ 0.86
VPS13AQ96RL7 SERP1-205ENST00000487153 657 ntTSL 4 BASIC20.42■□□□□ 0.86
VPS13AQ96RL7 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC20.42■□□□□ 0.86
VPS13AQ96RL7 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
VPS13AQ96RL7 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
VPS13AQ96RL7 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
VPS13AQ96RL7 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
VPS13AQ96RL7 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC20.42■□□□□ 0.86
VPS13AQ96RL7 COPS8-203ENST00000409334 794 ntTSL 5 BASIC20.42■□□□□ 0.86
VPS13AQ96RL7 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
VPS13AQ96RL7 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC20.42■□□□□ 0.86
VPS13AQ96RL7 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
VPS13AQ96RL7 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC20.42■□□□□ 0.86
VPS13AQ96RL7 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC20.42■□□□□ 0.86
VPS13AQ96RL7 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
VPS13AQ96RL7 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC20.42■□□□□ 0.86
VPS13AQ96RL7 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS13AQ96RL7 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS13AQ96RL7 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
VPS13AQ96RL7 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS13AQ96RL7 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC20.41■□□□□ 0.86
VPS13AQ96RL7 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC20.41■□□□□ 0.86
VPS13AQ96RL7 AL355355.2-201ENST00000442321 338 ntBASIC20.41■□□□□ 0.86
VPS13AQ96RL7 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC20.41■□□□□ 0.86
VPS13AQ96RL7 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC20.41■□□□□ 0.86
VPS13AQ96RL7 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC20.41■□□□□ 0.86
VPS13AQ96RL7 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC20.41■□□□□ 0.86
VPS13AQ96RL7 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
VPS13AQ96RL7 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC20.41■□□□□ 0.86
VPS13AQ96RL7 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
VPS13AQ96RL7 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VPS13AQ96RL7 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
VPS13AQ96RL7 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC20.4■□□□□ 0.86
VPS13AQ96RL7 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC20.4■□□□□ 0.86
VPS13AQ96RL7 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
VPS13AQ96RL7 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VPS13AQ96RL7 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
VPS13AQ96RL7 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC20.4■□□□□ 0.86
VPS13AQ96RL7 NARF-205ENST00000412079 1760 ntTSL 5 BASIC20.4■□□□□ 0.86
VPS13AQ96RL7 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
VPS13AQ96RL7 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
VPS13AQ96RL7 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
VPS13AQ96RL7 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC20.4■□□□□ 0.86
VPS13AQ96RL7 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC20.4■□□□□ 0.86
VPS13AQ96RL7 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC20.39■□□□□ 0.86
VPS13AQ96RL7 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC20.39■□□□□ 0.85
VPS13AQ96RL7 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC20.39■□□□□ 0.85
VPS13AQ96RL7 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC20.39■□□□□ 0.85
VPS13AQ96RL7 TMA16-209ENST00000513272 803 ntTSL 2 BASIC20.39■□□□□ 0.85
VPS13AQ96RL7 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
VPS13AQ96RL7 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC20.39■□□□□ 0.85
VPS13AQ96RL7 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
VPS13AQ96RL7 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
VPS13AQ96RL7 FDX2-207ENST00000494368 584 ntTSL 4 BASIC20.39■□□□□ 0.85
VPS13AQ96RL7 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
VPS13AQ96RL7 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC20.39■□□□□ 0.85
VPS13AQ96RL7 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC20.38■□□□□ 0.85
VPS13AQ96RL7 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms