Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
CCDC58Q4VC31 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC58Q4VC31 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC58Q4VC31 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
CCDC58Q4VC31 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC58Q4VC31 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC58Q4VC31 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
CCDC58Q4VC31 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC58Q4VC31 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC18.22■□□□□ 0.51
CCDC58Q4VC31 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC18.22■□□□□ 0.51
CCDC58Q4VC31 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC18.22■□□□□ 0.51
CCDC58Q4VC31 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC58Q4VC31 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC58Q4VC31 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC58Q4VC31 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
CCDC58Q4VC31 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC58Q4VC31 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC58Q4VC31 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC18.22■□□□□ 0.51
CCDC58Q4VC31 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC18.22■□□□□ 0.51
CCDC58Q4VC31 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
CCDC58Q4VC31 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
CCDC58Q4VC31 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC58Q4VC31 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC18.22■□□□□ 0.51
CCDC58Q4VC31 AL512408.1-201ENST00000569378 2000 ntBASIC18.22■□□□□ 0.51
CCDC58Q4VC31 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
CCDC58Q4VC31 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
CCDC58Q4VC31 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC18.21■□□□□ 0.51
CCDC58Q4VC31 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC58Q4VC31 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC58Q4VC31 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
CCDC58Q4VC31 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC58Q4VC31 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
CCDC58Q4VC31 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC58Q4VC31 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
CCDC58Q4VC31 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
CCDC58Q4VC31 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC58Q4VC31 PTMA-205ENST00000410064 814 ntTSL 2 BASIC18.21■□□□□ 0.51
CCDC58Q4VC31 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC58Q4VC31 RNF146-206ENST00000480444 843 ntTSL 2 BASIC18.21■□□□□ 0.51
CCDC58Q4VC31 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
CCDC58Q4VC31 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC58Q4VC31 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
CCDC58Q4VC31 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC18.21■□□□□ 0.51
CCDC58Q4VC31 EXOC3-AS1-202ENST00000623673 1663 ntBASIC18.21■□□□□ 0.51
CCDC58Q4VC31 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC58Q4VC31 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC18.21■□□□□ 0.51
CCDC58Q4VC31 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC58Q4VC31 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.5
CCDC58Q4VC31 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
CCDC58Q4VC31 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC58Q4VC31 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
CCDC58Q4VC31 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
CCDC58Q4VC31 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
CCDC58Q4VC31 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
CCDC58Q4VC31 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC18.2■□□□□ 0.5
CCDC58Q4VC31 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
CCDC58Q4VC31 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC58Q4VC31 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC58Q4VC31 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
CCDC58Q4VC31 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC18.2■□□□□ 0.5
CCDC58Q4VC31 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC18.2■□□□□ 0.5
CCDC58Q4VC31 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
CCDC58Q4VC31 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC58Q4VC31 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC58Q4VC31 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC58Q4VC31 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC58Q4VC31 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC58Q4VC31 AFG3L1P-217ENST00000557444 2447 ntBASIC18.2■□□□□ 0.5
CCDC58Q4VC31 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC58Q4VC31 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC18.2■□□□□ 0.5
CCDC58Q4VC31 AC138932.1-201ENST00000534164 6830 ntBASIC18.2■□□□□ 0.5
CCDC58Q4VC31 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC18.19■□□□□ 0.5
CCDC58Q4VC31 AC005224.4-201ENST00000583262 1652 ntBASIC18.19■□□□□ 0.5
CCDC58Q4VC31 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC58Q4VC31 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
CCDC58Q4VC31 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC58Q4VC31 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC58Q4VC31 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC58Q4VC31 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC58Q4VC31 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
CCDC58Q4VC31 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
CCDC58Q4VC31 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC58Q4VC31 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC58Q4VC31 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC18.19■□□□□ 0.5
CCDC58Q4VC31 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC58Q4VC31 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
CCDC58Q4VC31 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC18.19■□□□□ 0.5
CCDC58Q4VC31 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC18.19■□□□□ 0.5
CCDC58Q4VC31 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC18.19■□□□□ 0.5
CCDC58Q4VC31 TRIR-205ENST00000592273 783 ntTSL 3 BASIC18.19■□□□□ 0.5
CCDC58Q4VC31 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC18.19■□□□□ 0.5
CCDC58Q4VC31 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC18.19■□□□□ 0.5
CCDC58Q4VC31 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC18.19■□□□□ 0.5
CCDC58Q4VC31 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC18.19■□□□□ 0.5
CCDC58Q4VC31 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC58Q4VC31 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC58Q4VC31 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.19■□□□□ 0.5
CCDC58Q4VC31 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC58Q4VC31 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC18.19■□□□□ 0.5
CCDC58Q4VC31 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC18.19■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 56.6 ms