Protein–RNA interactions for Protein: Q15878

CACNA1E, Voltage-dependent R-type calcium channel subunit alpha-1E, humanhuman

Predictions only

Length 2,313 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1EQ15878 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC20.08■□□□□ 0.81
CACNA1EQ15878 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CACNA1EQ15878 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.8
CACNA1EQ15878 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CACNA1EQ15878 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.08■□□□□ 0.8
CACNA1EQ15878 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC20.08■□□□□ 0.8
CACNA1EQ15878 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
CACNA1EQ15878 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
CACNA1EQ15878 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
CACNA1EQ15878 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC20.08■□□□□ 0.8
CACNA1EQ15878 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
CACNA1EQ15878 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC20.08■□□□□ 0.8
CACNA1EQ15878 KRASP1-201ENST00000407852 552 ntBASIC20.08■□□□□ 0.8
CACNA1EQ15878 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC20.08■□□□□ 0.8
CACNA1EQ15878 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC20.08■□□□□ 0.8
CACNA1EQ15878 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC20.08■□□□□ 0.8
CACNA1EQ15878 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.8
CACNA1EQ15878 ME2-206ENST00000638410 2289 ntTSL 5 BASIC20.08■□□□□ 0.8
CACNA1EQ15878 ME2-210ENST00000639255 2262 ntTSL 5 BASIC20.08■□□□□ 0.8
CACNA1EQ15878 ME2-208ENST00000638937 2471 ntTSL 5 BASIC20.07■□□□□ 0.8
CACNA1EQ15878 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CACNA1EQ15878 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
CACNA1EQ15878 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CACNA1EQ15878 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
CACNA1EQ15878 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CACNA1EQ15878 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CACNA1EQ15878 TMPOP1-202ENST00000424642 1267 ntBASIC20.07■□□□□ 0.8
CACNA1EQ15878 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC20.07■□□□□ 0.8
CACNA1EQ15878 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CACNA1EQ15878 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC20.07■□□□□ 0.8
CACNA1EQ15878 AC113410.3-201ENST00000623366 203 ntBASIC20.07■□□□□ 0.8
CACNA1EQ15878 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC20.07■□□□□ 0.8
CACNA1EQ15878 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.07■□□□□ 0.8
CACNA1EQ15878 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CACNA1EQ15878 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC20.07■□□□□ 0.8
CACNA1EQ15878 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CACNA1EQ15878 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
CACNA1EQ15878 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC20.07■□□□□ 0.8
CACNA1EQ15878 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC20.07■□□□□ 0.8
CACNA1EQ15878 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
CACNA1EQ15878 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC20.07■□□□□ 0.8
CACNA1EQ15878 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
CACNA1EQ15878 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC20.07■□□□□ 0.8
CACNA1EQ15878 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC20.07■□□□□ 0.8
CACNA1EQ15878 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CACNA1EQ15878 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
CACNA1EQ15878 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CACNA1EQ15878 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CACNA1EQ15878 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CACNA1EQ15878 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CACNA1EQ15878 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC20.06■□□□□ 0.8
CACNA1EQ15878 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC20.06■□□□□ 0.8
CACNA1EQ15878 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC20.06■□□□□ 0.8
CACNA1EQ15878 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CACNA1EQ15878 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC20.06■□□□□ 0.8
CACNA1EQ15878 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC20.06■□□□□ 0.8
CACNA1EQ15878 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CACNA1EQ15878 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CACNA1EQ15878 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC20.06■□□□□ 0.8
CACNA1EQ15878 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC20.06■□□□□ 0.8
CACNA1EQ15878 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CACNA1EQ15878 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CACNA1EQ15878 RER1-204ENST00000378518 522 ntTSL 3 BASIC20.05■□□□□ 0.8
CACNA1EQ15878 HES2-206ENST00000489730 730 ntTSL 2 BASIC20.05■□□□□ 0.8
CACNA1EQ15878 KRT18P35-201ENST00000510488 1269 ntBASIC20.05■□□□□ 0.8
CACNA1EQ15878 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC20.05■□□□□ 0.8
CACNA1EQ15878 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CACNA1EQ15878 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CACNA1EQ15878 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CACNA1EQ15878 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CACNA1EQ15878 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC20.05■□□□□ 0.8
CACNA1EQ15878 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC20.05■□□□□ 0.8
CACNA1EQ15878 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
CACNA1EQ15878 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CACNA1EQ15878 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CACNA1EQ15878 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CACNA1EQ15878 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
CACNA1EQ15878 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC20.05■□□□□ 0.8
CACNA1EQ15878 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC20.04■□□□□ 0.8
CACNA1EQ15878 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC20.04■□□□□ 0.8
CACNA1EQ15878 NUDT16P1-203ENST00000513809 620 ntBASIC20.04■□□□□ 0.8
CACNA1EQ15878 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC20.04■□□□□ 0.8
CACNA1EQ15878 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC20.04■□□□□ 0.8
CACNA1EQ15878 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CACNA1EQ15878 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC20.04■□□□□ 0.8
CACNA1EQ15878 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC20.04■□□□□ 0.8
CACNA1EQ15878 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC20.04■□□□□ 0.8
CACNA1EQ15878 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC20.04■□□□□ 0.8
CACNA1EQ15878 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CACNA1EQ15878 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.04■□□□□ 0.8
CACNA1EQ15878 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CACNA1EQ15878 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
CACNA1EQ15878 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC20.04■□□□□ 0.8
CACNA1EQ15878 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CACNA1EQ15878 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CACNA1EQ15878 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CACNA1EQ15878 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
CACNA1EQ15878 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
CACNA1EQ15878 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CACNA1EQ15878 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms