Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC23.78■■□□□ 1.4
HMGCS2P54868 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC23.78■■□□□ 1.4
HMGCS2P54868 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC23.78■■□□□ 1.4
HMGCS2P54868 AC211429.1-201ENST00000415277 523 ntBASIC23.78■■□□□ 1.4
HMGCS2P54868 TSPY7P-201ENST00000431358 1114 ntBASIC23.78■■□□□ 1.4
HMGCS2P54868 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC23.78■■□□□ 1.4
HMGCS2P54868 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
HMGCS2P54868 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
HMGCS2P54868 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC23.78■■□□□ 1.4
HMGCS2P54868 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
HMGCS2P54868 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC23.78■■□□□ 1.4
HMGCS2P54868 REXO1L12P-201ENST00000622156 912 ntBASIC23.78■■□□□ 1.4
HMGCS2P54868 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
HMGCS2P54868 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
HMGCS2P54868 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC23.78■■□□□ 1.4
HMGCS2P54868 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC23.78■■□□□ 1.4
HMGCS2P54868 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC23.78■■□□□ 1.4
HMGCS2P54868 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
HMGCS2P54868 MOK-233ENST00000524214 1539 ntTSL 2 BASIC23.78■■□□□ 1.4
HMGCS2P54868 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC23.78■■□□□ 1.4
HMGCS2P54868 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
HMGCS2P54868 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
HMGCS2P54868 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
HMGCS2P54868 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC23.77■■□□□ 1.4
HMGCS2P54868 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
HMGCS2P54868 AC233723.2-201ENST00000623798 2106 ntBASIC23.77■■□□□ 1.4
HMGCS2P54868 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC23.77■■□□□ 1.4
HMGCS2P54868 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
HMGCS2P54868 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC23.77■■□□□ 1.4
HMGCS2P54868 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
HMGCS2P54868 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC23.77■■□□□ 1.4
HMGCS2P54868 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
HMGCS2P54868 PALM-207ENST00000590161 2137 ntTSL 4 BASIC23.77■■□□□ 1.4
HMGCS2P54868 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
HMGCS2P54868 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
HMGCS2P54868 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC23.76■■□□□ 1.39
HMGCS2P54868 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
HMGCS2P54868 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
HMGCS2P54868 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC23.76■■□□□ 1.39
HMGCS2P54868 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC23.76■■□□□ 1.39
HMGCS2P54868 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
HMGCS2P54868 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC23.75■■□□□ 1.39
HMGCS2P54868 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
HMGCS2P54868 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC23.75■■□□□ 1.39
HMGCS2P54868 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC23.75■■□□□ 1.39
HMGCS2P54868 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
HMGCS2P54868 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC23.75■■□□□ 1.39
HMGCS2P54868 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
HMGCS2P54868 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
HMGCS2P54868 KRASP1-201ENST00000407852 552 ntBASIC23.75■■□□□ 1.39
HMGCS2P54868 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC23.75■■□□□ 1.39
HMGCS2P54868 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
HMGCS2P54868 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
HMGCS2P54868 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC23.75■■□□□ 1.39
HMGCS2P54868 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC23.75■■□□□ 1.39
HMGCS2P54868 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC23.75■■□□□ 1.39
HMGCS2P54868 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
HMGCS2P54868 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC23.74■■□□□ 1.39
HMGCS2P54868 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC23.74■■□□□ 1.39
HMGCS2P54868 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC23.74■■□□□ 1.39
HMGCS2P54868 AL390719.1-204ENST00000412397 1219 ntBASIC23.74■■□□□ 1.39
HMGCS2P54868 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC23.74■■□□□ 1.39
HMGCS2P54868 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC23.74■■□□□ 1.39
HMGCS2P54868 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC23.74■■□□□ 1.39
HMGCS2P54868 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC23.74■■□□□ 1.39
HMGCS2P54868 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC23.74■■□□□ 1.39
HMGCS2P54868 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
HMGCS2P54868 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
HMGCS2P54868 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
HMGCS2P54868 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC23.73■■□□□ 1.39
HMGCS2P54868 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC23.73■■□□□ 1.39
HMGCS2P54868 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC23.73■■□□□ 1.39
HMGCS2P54868 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
HMGCS2P54868 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
HMGCS2P54868 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
HMGCS2P54868 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC23.73■■□□□ 1.39
HMGCS2P54868 RER1-204ENST00000378518 522 ntTSL 3 BASIC23.73■■□□□ 1.39
HMGCS2P54868 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC23.73■■□□□ 1.39
HMGCS2P54868 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC23.73■■□□□ 1.39
HMGCS2P54868 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
HMGCS2P54868 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC23.73■■□□□ 1.39
HMGCS2P54868 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC23.73■■□□□ 1.39
HMGCS2P54868 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
HMGCS2P54868 AC110285.5-201ENST00000611501 352 ntBASIC23.73■■□□□ 1.39
HMGCS2P54868 AL049637.2-201ENST00000641778 930 ntBASIC23.73■■□□□ 1.39
HMGCS2P54868 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
HMGCS2P54868 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
HMGCS2P54868 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC23.73■■□□□ 1.39
HMGCS2P54868 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
HMGCS2P54868 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC23.73■■□□□ 1.39
HMGCS2P54868 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
HMGCS2P54868 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
HMGCS2P54868 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
HMGCS2P54868 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
HMGCS2P54868 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
HMGCS2P54868 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
HMGCS2P54868 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC23.72■■□□□ 1.39
HMGCS2P54868 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
HMGCS2P54868 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC23.72■■□□□ 1.39
HMGCS2P54868 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC23.72■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms