Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SOX3P41225 AC245052.3-201ENST00000450182 901 ntBASIC19.21■□□□□ 0.67
SOX3P41225 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC19.21■□□□□ 0.67
SOX3P41225 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC19.21■□□□□ 0.67
SOX3P41225 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SOX3P41225 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SOX3P41225 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SOX3P41225 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SOX3P41225 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SOX3P41225 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SOX3P41225 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
SOX3P41225 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SOX3P41225 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
SOX3P41225 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SOX3P41225 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SOX3P41225 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC19.2■□□□□ 0.66
SOX3P41225 AC083906.2-201ENST00000511578 360 ntBASIC19.2■□□□□ 0.66
SOX3P41225 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SOX3P41225 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SOX3P41225 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SOX3P41225 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SOX3P41225 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SOX3P41225 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SOX3P41225 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SOX3P41225 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SOX3P41225 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC19.2■□□□□ 0.66
SOX3P41225 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SOX3P41225 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC19.19■□□□□ 0.66
SOX3P41225 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SOX3P41225 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SOX3P41225 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SOX3P41225 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SOX3P41225 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SOX3P41225 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
SOX3P41225 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SOX3P41225 METTL15-202ENST00000403099 795 ntTSL 5 BASIC19.19■□□□□ 0.66
SOX3P41225 BET1L-204ENST00000410108 637 ntTSL 3 BASIC19.19■□□□□ 0.66
SOX3P41225 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC19.19■□□□□ 0.66
SOX3P41225 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SOX3P41225 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
SOX3P41225 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC19.19■□□□□ 0.66
SOX3P41225 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
SOX3P41225 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SOX3P41225 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
SOX3P41225 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.19■□□□□ 0.66
SOX3P41225 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SOX3P41225 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SOX3P41225 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC19.19■□□□□ 0.66
SOX3P41225 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SOX3P41225 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SOX3P41225 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC19.18■□□□□ 0.66
SOX3P41225 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SOX3P41225 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC19.18■□□□□ 0.66
SOX3P41225 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SOX3P41225 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
SOX3P41225 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SOX3P41225 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC19.18■□□□□ 0.66
SOX3P41225 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SOX3P41225 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC19.18■□□□□ 0.66
SOX3P41225 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
SOX3P41225 AF201337.1-201ENST00000520239 748 ntBASIC19.18■□□□□ 0.66
SOX3P41225 OAS3-207ENST00000551007 998 ntTSL 2 BASIC19.18■□□□□ 0.66
SOX3P41225 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC19.18■□□□□ 0.66
SOX3P41225 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC19.18■□□□□ 0.66
SOX3P41225 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
SOX3P41225 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SOX3P41225 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SOX3P41225 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
SOX3P41225 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SOX3P41225 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SOX3P41225 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
SOX3P41225 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SOX3P41225 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SOX3P41225 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC19.17■□□□□ 0.66
SOX3P41225 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC19.17■□□□□ 0.66
SOX3P41225 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC19.17■□□□□ 0.66
SOX3P41225 AC105036.2-201ENST00000569468 176 ntBASIC19.17■□□□□ 0.66
SOX3P41225 AC133552.2-202ENST00000575694 574 ntBASIC19.17■□□□□ 0.66
SOX3P41225 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC19.17■□□□□ 0.66
SOX3P41225 AL591742.1-201ENST00000604433 565 ntBASIC19.17■□□□□ 0.66
SOX3P41225 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SOX3P41225 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC19.17■□□□□ 0.66
SOX3P41225 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
SOX3P41225 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SOX3P41225 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SOX3P41225 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
SOX3P41225 RNF165-205ENST00000588679 2904 ntBASIC19.17■□□□□ 0.66
SOX3P41225 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SOX3P41225 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SOX3P41225 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SOX3P41225 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SOX3P41225 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC19.16■□□□□ 0.66
SOX3P41225 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC19.16■□□□□ 0.66
SOX3P41225 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC19.16■□□□□ 0.66
SOX3P41225 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SOX3P41225 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SOX3P41225 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SOX3P41225 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
SOX3P41225 AL355802.2-201ENST00000402069 882 ntBASIC19.16■□□□□ 0.66
SOX3P41225 CD44-222ENST00000526025 1052 ntTSL 2 BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms