Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HLA-DMBP28068 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HLA-DMBP28068 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
HLA-DMBP28068 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC15.56■□□□□ 0.08
HLA-DMBP28068 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HLA-DMBP28068 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HLA-DMBP28068 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HLA-DMBP28068 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC15.56■□□□□ 0.08
HLA-DMBP28068 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
HLA-DMBP28068 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
HLA-DMBP28068 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HLA-DMBP28068 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HLA-DMBP28068 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
HLA-DMBP28068 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
HLA-DMBP28068 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HLA-DMBP28068 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC15.55■□□□□ 0.08
HLA-DMBP28068 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HLA-DMBP28068 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
HLA-DMBP28068 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC15.55■□□□□ 0.08
HLA-DMBP28068 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
HLA-DMBP28068 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
HLA-DMBP28068 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC15.55■□□□□ 0.08
HLA-DMBP28068 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC15.55■□□□□ 0.08
HLA-DMBP28068 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC15.55■□□□□ 0.08
HLA-DMBP28068 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC15.55■□□□□ 0.08
HLA-DMBP28068 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC15.55■□□□□ 0.08
HLA-DMBP28068 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC15.55■□□□□ 0.08
HLA-DMBP28068 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HLA-DMBP28068 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HLA-DMBP28068 NAA20-201ENST00000310450 920 ntTSL 2 BASIC15.55■□□□□ 0.08
HLA-DMBP28068 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC15.55■□□□□ 0.08
HLA-DMBP28068 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
HLA-DMBP28068 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC15.55■□□□□ 0.08
HLA-DMBP28068 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
HLA-DMBP28068 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC15.55■□□□□ 0.08
HLA-DMBP28068 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
HLA-DMBP28068 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HLA-DMBP28068 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC15.55■□□□□ 0.08
HLA-DMBP28068 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC15.55■□□□□ 0.08
HLA-DMBP28068 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC15.55■□□□□ 0.08
HLA-DMBP28068 RARRES2P11-201ENST00000635158 484 ntBASIC15.55■□□□□ 0.08
HLA-DMBP28068 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
HLA-DMBP28068 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
HLA-DMBP28068 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
HLA-DMBP28068 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC15.55■□□□□ 0.08
HLA-DMBP28068 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
HLA-DMBP28068 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
HLA-DMBP28068 STAC-204ENST00000457375 1366 ntTSL 2 BASIC15.54■□□□□ 0.08
HLA-DMBP28068 LINC02228-203ENST00000641970 1355 ntBASIC15.54■□□□□ 0.08
HLA-DMBP28068 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
HLA-DMBP28068 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC15.54■□□□□ 0.08
HLA-DMBP28068 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
HLA-DMBP28068 HACD1-201ENST00000326961 773 ntTSL 2 BASIC15.54■□□□□ 0.08
HLA-DMBP28068 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
HLA-DMBP28068 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
HLA-DMBP28068 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC15.54■□□□□ 0.08
HLA-DMBP28068 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
HLA-DMBP28068 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
HLA-DMBP28068 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
HLA-DMBP28068 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
HLA-DMBP28068 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
HLA-DMBP28068 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
HLA-DMBP28068 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
HLA-DMBP28068 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
HLA-DMBP28068 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
HLA-DMBP28068 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
HLA-DMBP28068 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
HLA-DMBP28068 POU5F1P4-201ENST00000413175 1085 ntBASIC15.53■□□□□ 0.08
HLA-DMBP28068 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC15.53■□□□□ 0.08
HLA-DMBP28068 DUX4L2-201ENST00000561772 1275 ntBASIC15.53■□□□□ 0.08
HLA-DMBP28068 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC15.53■□□□□ 0.08
HLA-DMBP28068 CCDC92B-201ENST00000575506 885 ntBASIC15.53■□□□□ 0.08
HLA-DMBP28068 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
HLA-DMBP28068 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC15.53■□□□□ 0.08
HLA-DMBP28068 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
HLA-DMBP28068 DUX4L6-201ENST00000626483 1275 ntBASIC15.53■□□□□ 0.08
HLA-DMBP28068 DUX4L1-201ENST00000627662 1275 ntBASIC15.53■□□□□ 0.08
HLA-DMBP28068 DUX4L8-201ENST00000629013 1275 ntBASIC15.53■□□□□ 0.08
HLA-DMBP28068 DUX4L3-201ENST00000630187 1275 ntBASIC15.53■□□□□ 0.08
HLA-DMBP28068 DUX4L7-201ENST00000630678 1275 ntBASIC15.53■□□□□ 0.08
HLA-DMBP28068 DUX4L5-201ENST00000630834 1275 ntBASIC15.53■□□□□ 0.08
HLA-DMBP28068 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
HLA-DMBP28068 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
HLA-DMBP28068 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
HLA-DMBP28068 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
HLA-DMBP28068 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC15.53■□□□□ 0.08
HLA-DMBP28068 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
HLA-DMBP28068 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
HLA-DMBP28068 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
HLA-DMBP28068 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
HLA-DMBP28068 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC15.53■□□□□ 0.08
HLA-DMBP28068 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
HLA-DMBP28068 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
HLA-DMBP28068 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC15.52■□□□□ 0.08
HLA-DMBP28068 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC15.52■□□□□ 0.08
HLA-DMBP28068 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
HLA-DMBP28068 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
HLA-DMBP28068 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
HLA-DMBP28068 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
HLA-DMBP28068 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms