Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC21.65■■□□□ 1.06
COL6A3P12111 AC139887.4-201ENST00000607877 719 ntBASIC21.65■■□□□ 1.06
COL6A3P12111 MOK-233ENST00000524214 1539 ntTSL 2 BASIC21.65■■□□□ 1.06
COL6A3P12111 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL6A3P12111 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC21.65■■□□□ 1.06
COL6A3P12111 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL6A3P12111 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL6A3P12111 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC21.65■■□□□ 1.06
COL6A3P12111 SERP1-205ENST00000487153 657 ntTSL 4 BASIC21.65■■□□□ 1.06
COL6A3P12111 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC21.65■■□□□ 1.06
COL6A3P12111 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC21.65■■□□□ 1.06
COL6A3P12111 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
COL6A3P12111 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
COL6A3P12111 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL6A3P12111 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC21.64■■□□□ 1.06
COL6A3P12111 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
COL6A3P12111 AC012313.10-201ENST00000623509 926 ntBASIC21.64■■□□□ 1.06
COL6A3P12111 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.06
COL6A3P12111 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
COL6A3P12111 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
COL6A3P12111 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.05
COL6A3P12111 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
COL6A3P12111 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
COL6A3P12111 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL6A3P12111 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL6A3P12111 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL6A3P12111 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC21.64■■□□□ 1.05
COL6A3P12111 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC21.64■■□□□ 1.05
COL6A3P12111 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC21.64■■□□□ 1.05
COL6A3P12111 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
COL6A3P12111 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL6A3P12111 AC124283.5-201ENST00000624661 1809 ntBASIC21.63■■□□□ 1.05
COL6A3P12111 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL6A3P12111 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL6A3P12111 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
COL6A3P12111 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC21.63■■□□□ 1.05
COL6A3P12111 TSPY14P-201ENST00000303979 915 ntBASIC21.63■■□□□ 1.05
COL6A3P12111 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
COL6A3P12111 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL6A3P12111 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC21.63■■□□□ 1.05
COL6A3P12111 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL6A3P12111 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL6A3P12111 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC21.62■■□□□ 1.05
COL6A3P12111 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
COL6A3P12111 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL6A3P12111 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL6A3P12111 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC21.62■■□□□ 1.05
COL6A3P12111 AL022342.1-201ENST00000400363 863 ntBASIC21.62■■□□□ 1.05
COL6A3P12111 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC21.62■■□□□ 1.05
COL6A3P12111 AC008622.2-201ENST00000617006 1229 ntBASIC21.62■■□□□ 1.05
COL6A3P12111 CLN6-221ENST00000637494 765 ntTSL 5 BASIC21.62■■□□□ 1.05
COL6A3P12111 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL6A3P12111 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL6A3P12111 YBX1P2-201ENST00000489612 999 ntBASIC21.62■■□□□ 1.05
COL6A3P12111 IER3-202ENST00000376377 1350 ntBASIC21.62■■□□□ 1.05
COL6A3P12111 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC21.61■■□□□ 1.05
COL6A3P12111 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL6A3P12111 AL121956.5-201ENST00000625261 221 ntBASIC21.61■■□□□ 1.05
COL6A3P12111 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
COL6A3P12111 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC21.61■■□□□ 1.05
COL6A3P12111 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL6A3P12111 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
COL6A3P12111 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
COL6A3P12111 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC21.61■■□□□ 1.05
COL6A3P12111 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC21.61■■□□□ 1.05
COL6A3P12111 AC003102.1-202ENST00000563394 1796 ntBASIC21.61■■□□□ 1.05
COL6A3P12111 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL6A3P12111 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC21.6■■□□□ 1.05
COL6A3P12111 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC21.6■■□□□ 1.05
COL6A3P12111 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
COL6A3P12111 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC21.6■■□□□ 1.05
COL6A3P12111 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC21.6■■□□□ 1.05
COL6A3P12111 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL6A3P12111 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
COL6A3P12111 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC21.6■■□□□ 1.05
COL6A3P12111 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL6A3P12111 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC21.6■■□□□ 1.05
COL6A3P12111 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
COL6A3P12111 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL6A3P12111 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL6A3P12111 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
COL6A3P12111 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC21.6■■□□□ 1.05
COL6A3P12111 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL6A3P12111 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
COL6A3P12111 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC21.6■■□□□ 1.05
COL6A3P12111 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
COL6A3P12111 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
COL6A3P12111 RNF152P1-201ENST00000397754 604 ntBASIC21.59■■□□□ 1.05
COL6A3P12111 FAM87A-204ENST00000613235 858 ntBASIC21.59■■□□□ 1.05
COL6A3P12111 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC21.59■■□□□ 1.05
COL6A3P12111 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
COL6A3P12111 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
COL6A3P12111 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
COL6A3P12111 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
COL6A3P12111 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
COL6A3P12111 GPX4-207ENST00000589115 812 ntTSL 2 BASIC21.59■■□□□ 1.05
COL6A3P12111 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
COL6A3P12111 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC21.59■■□□□ 1.05
COL6A3P12111 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
COL6A3P12111 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms