Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 ASAH1-253ENST00000637609 4981 ntTSL 57.05□□□□□ -1.285e-8■■■□□ 15.6
SMNDC1O75940 ASAH1-232ENST00000636691 2472 ntTSL 5 BASIC6.94□□□□□ -1.35e-8■■■□□ 15.6
SMNDC1O75940 ASAH1-246ENST00000637343 3671 ntTSL 46.94□□□□□ -1.35e-8■■■□□ 15.6
SMNDC1O75940 ASAH1-206ENST00000518746 3870 ntTSL 26.6□□□□□ -1.355e-8■■■□□ 15.6
SMNDC1O75940 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC5.99□□□□□ -1.455e-8■■■□□ 15.6
SMNDC1O75940 ASAH1-208ENST00000519545 771 ntTSL 35.87□□□□□ -1.475e-8■■■□□ 15.6
SMNDC1O75940 ASAH1-262ENST00000637857 2585 ntTSL 55.76□□□□□ -1.495e-8■■■□□ 15.6
SMNDC1O75940 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.55e-8■■■□□ 15.6
SMNDC1O75940 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC5.52□□□□□ -1.535e-8■■■□□ 15.6
SMNDC1O75940 ASAH1-242ENST00000637014 2626 ntTSL 25.46□□□□□ -1.535e-8■■■□□ 15.6
SMNDC1O75940 ASAH1-218ENST00000636009 2148 ntTSL 55.42□□□□□ -1.545e-8■■■□□ 15.6
SMNDC1O75940 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC4.37□□□□□ -1.715e-8■■■□□ 15.6
SMNDC1O75940 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.032e-8■■■□□ 15.6
SMNDC1O75940 FANCA-207ENST00000561667 528 ntTSL 410.53□□□□□ -0.723e-8■■■□□ 15.5
SMNDC1O75940 SREBF1-214ENST00000486311 473 ntTSL 320.2■□□□□ 0.823e-8■■■□□ 15.5
SMNDC1O75940 SREBF1-212ENST00000478616 882 ntTSL 516.75■□□□□ 0.273e-7■■■□□ 15.5
SMNDC1O75940 SREBF1-213ENST00000485080 1230 ntTSL 515.81■□□□□ 0.123e-8■■■□□ 15.5
SMNDC1O75940 SREBF1-218ENST00000578469 588 ntTSL 315.67■□□□□ 0.13e-8■■■□□ 15.5
SMNDC1O75940 PUM2-203ENST00000361078 6251 ntTSL 2 BASIC13□□□□□ -0.333e-6■■■□□ 15.5
SMNDC1O75940 PUM2-204ENST00000403432 3594 ntAPPRIS P1 TSL 2 BASIC11.92□□□□□ -0.53e-6■■■□□ 15.5
SMNDC1O75940 PUM2-201ENST00000319801 6002 ntTSL 1 (best) BASIC6.53□□□□□ -1.363e-6■■■□□ 15.5
SMNDC1O75940 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.43e-6■■■□□ 15.5
SMNDC1O75940 HNRNPH1-247ENST00000523921 584 ntTSL 210.29□□□□□ -0.767e-15■■■□□ 15.5
SMNDC1O75940 ADAMTSL4-203ENST00000369039 4319 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.121e-6■■■□□ 15.5
SMNDC1O75940 ADAMTSL4-201ENST00000271643 4250 ntAPPRIS P3 TSL 5 BASIC13.8□□□□□ -0.21e-6■■■□□ 15.5
SMNDC1O75940 GOLGA2-203ENST00000458730 704 ntTSL 515.77■□□□□ 0.123e-15■■■□□ 15.5
SMNDC1O75940 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.48e-7■■■□□ 15.5
SMNDC1O75940 RABL6-210ENST00000484471 2746 ntTSL 521.5■■□□□ 1.038e-7■■■□□ 15.5
SMNDC1O75940 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.688e-7■■■□□ 15.5
SMNDC1O75940 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.58e-7■■■□□ 15.5
SMNDC1O75940 RABL6-208ENST00000464941 3361 ntTSL 216.92■□□□□ 0.38e-7■■■□□ 15.5
SMNDC1O75940 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.298e-7■■■□□ 15.5
SMNDC1O75940 TSC2-216ENST00000497886 3248 ntTSL 214.14□□□□□ -0.151e-6■■■□□ 15.5
SMNDC1O75940 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.62e-9■■■□□ 15.4
SMNDC1O75940 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.412e-9■■■□□ 15.4
SMNDC1O75940 DHRS2-208ENST00000556729 5318 ntTSL 216.66■□□□□ 0.262e-9■■■□□ 15.4
SMNDC1O75940 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.252e-9■■■□□ 15.4
SMNDC1O75940 DHRS2-207ENST00000556701 3157 ntTSL 1 (best)15.38■□□□□ 0.052e-9■■■□□ 15.4
SMNDC1O75940 DHRS2-209ENST00000557535 927 ntTSL 515.33■□□□□ 0.042e-9■■■□□ 15.4
SMNDC1O75940 DHRS2-206ENST00000556550 2595 nt14.48□□□□□ -0.092e-9■■■□□ 15.4
SMNDC1O75940 DHRS2-204ENST00000553600 844 ntTSL 212.93□□□□□ -0.342e-9■■■□□ 15.4
SMNDC1O75940 RPL13A-203ENST00000468655 407 ntTSL 210.44□□□□□ -0.743e-87■■■□□ 15.4
SMNDC1O75940 RPL3-206ENST00000453303 916 ntTSL 512.04□□□□□ -0.484e-17■■■□□ 15.4
SMNDC1O75940 AKAP9-206ENST00000435423 1904 ntTSL 29.56□□□□□ -0.884e-11■■■□□ 15.4
SMNDC1O75940 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC5.37□□□□□ -1.554e-11■■■□□ 15.4
SMNDC1O75940 AKAP9-204ENST00000394534 5652 ntAPPRIS ALT2 TSL 1 (best)5□□□□□ -1.614e-11■■■□□ 15.4
SMNDC1O75940 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.83□□□□□ -1.964e-11■■■□□ 15.4
SMNDC1O75940 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.7□□□□□ -1.984e-11■■■□□ 15.4
SMNDC1O75940 UBR4-205ENST00000417040 6175 ntTSL 512.68□□□□□ -0.382e-7■■■□□ 15.4
SMNDC1O75940 EIF4G2-215ENST00000530564 849 ntTSL 29.07□□□□□ -0.961e-47■■■□□ 15.4
SMNDC1O75940 EIF4G2-232ENST00000640650 2724 ntAPPRIS P2 TSL 1 (best) BASIC8.96□□□□□ -0.971e-47■■■□□ 15.4
SMNDC1O75940 SNORD97-201ENST00000459187 142 ntBASIC5.43□□□□□ -1.541e-47■■■□□ 15.4
SMNDC1O75940 EIF4G2-222ENST00000532120 223 ntTSL 34.46□□□□□ -1.71e-47■■■□□ 15.4
SMNDC1O75940 SNORA63-201ENST00000363450 132 ntBASIC6.7□□□□□ -1.341e-323■■■□□ 15.4
SMNDC1O75940 DDX39A-205ENST00000586993 585 ntTSL 419.92■□□□□ 0.782e-7■■■□□ 15.3
SMNDC1O75940 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC17.31■□□□□ 0.362e-7■■■□□ 15.3
SMNDC1O75940 DDX39A-204ENST00000586558 1127 ntTSL 217.02■□□□□ 0.322e-7■■■□□ 15.3
SMNDC1O75940 GIPR-203ENST00000585889 1414 ntTSL 1 (best)16.9■□□□□ 0.32e-7■■■□□ 15.3
SMNDC1O75940 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.22e-7■■■□□ 15.3
SMNDC1O75940 DDX39A-212ENST00000590260 988 ntTSL 216.26■□□□□ 0.192e-7■■■□□ 15.3
SMNDC1O75940 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC16.12■□□□□ 0.172e-7■■■□□ 15.3
SMNDC1O75940 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC15.22■□□□□ 0.032e-7■■■□□ 15.3
SMNDC1O75940 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.012e-7■■■□□ 15.3
SMNDC1O75940 GIPR-205ENST00000590918 3289 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.022e-7■■■□□ 15.3
SMNDC1O75940 PSRC1-211ENST00000474126 366 ntTSL 314.16□□□□□ -0.147e-8■■■□□ 15.3
SMNDC1O75940 STIP1-210ENST00000540887 877 ntTSL 213.84□□□□□ -0.192e-7■■■□□ 15.3
SMNDC1O75940 DDX39A-211ENST00000590239 565 ntTSL 413.36□□□□□ -0.272e-7■■■□□ 15.3
SMNDC1O75940 STIP1-204ENST00000536973 738 ntTSL 511.79□□□□□ -0.522e-7■■■□□ 15.3
SMNDC1O75940 LAMA5-205ENST00000464134 637 ntTSL 211.67□□□□□ -0.543e-7■■■□□ 15.3
SMNDC1O75940 FUS-209ENST00000566605 1787 ntTSL 1 (best)24.78■■□□□ 1.562e-12■■■□□ 15.3
SMNDC1O75940 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC22.84■■□□□ 1.252e-12■■■□□ 15.3
SMNDC1O75940 FUS-203ENST00000474990 827 ntTSL 320.51■□□□□ 0.872e-12■■■□□ 15.3
SMNDC1O75940 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.772e-12■■■□□ 15.3
SMNDC1O75940 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.162e-12■■■□□ 15.3
SMNDC1O75940 FUS-206ENST00000487509 4920 ntTSL 214.16□□□□□ -0.142e-12■■■□□ 15.3
SMNDC1O75940 RPL13A-206ENST00000476268 1623 ntTSL 316.79■□□□□ 0.281e-87■■■□□ 15.3
SMNDC1O75940 RPL13A-208ENST00000477613 796 ntTSL 515.72■□□□□ 0.111e-87■■■□□ 15.3
SMNDC1O75940 RPL13A-212ENST00000488946 2312 ntTSL 215.03■□□□□ -01e-87■■■□□ 15.3
SMNDC1O75940 RPL13A-209ENST00000479992 850 ntTSL 314.28□□□□□ -0.121e-87■■■□□ 15.3
SMNDC1O75940 RPL13A-202ENST00000467825 660 ntTSL 513.47□□□□□ -0.251e-87■■■□□ 15.3
SMNDC1O75940 RPL13A-214ENST00000624069 1122 ntTSL 1 (best)13.35□□□□□ -0.271e-87■■■□□ 15.3
SMNDC1O75940 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.331e-87■■■□□ 15.3
SMNDC1O75940 RPL13A-213ENST00000621674 1098 ntTSL 5 BASIC12.34□□□□□ -0.431e-87■■■□□ 15.3
SMNDC1O75940 RPL13A-210ENST00000484279 794 ntTSL 512.34□□□□□ -0.431e-87■■■□□ 15.3
SMNDC1O75940 NFATC2IP-202ENST00000562977 638 ntTSL 423.91■■□□□ 1.427e-9■■■□□ 15.3
SMNDC1O75940 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC22.77■■□□□ 1.242e-11■■■□□ 15.3
SMNDC1O75940 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC22.23■■□□□ 1.152e-11■■■□□ 15.3
SMNDC1O75940 TECR-221ENST00000600395 846 ntTSL 320.83■□□□□ 0.933e-6■■■□□ 15.3
SMNDC1O75940 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.873e-6■■■□□ 15.3
SMNDC1O75940 IRF3-220ENST00000598108 1118 ntTSL 320.39■□□□□ 0.853e-6■■■□□ 15.3
SMNDC1O75940 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC20.27■□□□□ 0.843e-6■■■□□ 15.3
SMNDC1O75940 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC20.25■□□□□ 0.833e-6■■■□□ 15.3
SMNDC1O75940 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.791e-16■■■□□ 15.3
SMNDC1O75940 TECR-209ENST00000596953 1043 ntTSL 219.78■□□□□ 0.763e-6■■■□□ 15.3
SMNDC1O75940 TECR-202ENST00000593637 1043 ntTSL 319.78■□□□□ 0.763e-6■■■□□ 15.3
SMNDC1O75940 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC19.74■□□□□ 0.753e-6■■■□□ 15.3
SMNDC1O75940 SLC25A37-201ENST00000290075 1889 ntTSL 1 (best)19.56■□□□□ 0.721e-29■■■□□ 15.3
SMNDC1O75940 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC19.33■□□□□ 0.692e-11■■■□□ 15.3
SMNDC1O75940 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.677e-9■■■□□ 15.3
SMNDC1O75940 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.612e-11■■■□□ 15.3
Retrieved 100 of 11,362 protein–RNA pairs in 167.6 ms