Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
SGCEO43556 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SGCEO43556 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC18.03■□□□□ 0.48
SGCEO43556 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
SGCEO43556 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
SGCEO43556 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
SGCEO43556 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
SGCEO43556 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC18.03■□□□□ 0.48
SGCEO43556 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC18.03■□□□□ 0.48
SGCEO43556 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
SGCEO43556 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC18.03■□□□□ 0.48
SGCEO43556 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC18.03■□□□□ 0.48
SGCEO43556 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
SGCEO43556 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
SGCEO43556 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SGCEO43556 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
SGCEO43556 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SGCEO43556 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SGCEO43556 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SGCEO43556 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SGCEO43556 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SGCEO43556 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SGCEO43556 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SGCEO43556 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SGCEO43556 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC18.03■□□□□ 0.48
SGCEO43556 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC18.03■□□□□ 0.48
SGCEO43556 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC18.03■□□□□ 0.48
SGCEO43556 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC18.02■□□□□ 0.48
SGCEO43556 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SGCEO43556 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SGCEO43556 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC18.02■□□□□ 0.48
SGCEO43556 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SGCEO43556 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SGCEO43556 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SGCEO43556 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SGCEO43556 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SGCEO43556 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SGCEO43556 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SGCEO43556 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
SGCEO43556 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC18.02■□□□□ 0.48
SGCEO43556 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
SGCEO43556 AC016769.1-201ENST00000409132 1010 ntBASIC18.02■□□□□ 0.48
SGCEO43556 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SGCEO43556 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC18.02■□□□□ 0.48
SGCEO43556 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC18.02■□□□□ 0.48
SGCEO43556 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC18.02■□□□□ 0.48
SGCEO43556 ME2-216ENST00000639850 2331 ntTSL 5 BASIC18.02■□□□□ 0.48
SGCEO43556 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
SGCEO43556 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
SGCEO43556 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
SGCEO43556 STAC-204ENST00000457375 1366 ntTSL 2 BASIC18.02■□□□□ 0.47
SGCEO43556 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
SGCEO43556 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC18.02■□□□□ 0.47
SGCEO43556 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC18.01■□□□□ 0.47
SGCEO43556 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SGCEO43556 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
SGCEO43556 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
SGCEO43556 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC18.01■□□□□ 0.47
SGCEO43556 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC18.01■□□□□ 0.47
SGCEO43556 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC18.01■□□□□ 0.47
SGCEO43556 AL162430.1-201ENST00000480705 870 ntBASIC18.01■□□□□ 0.47
SGCEO43556 SPI1-203ENST00000533030 661 ntTSL 2 BASIC18.01■□□□□ 0.47
SGCEO43556 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC18.01■□□□□ 0.47
SGCEO43556 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC18.01■□□□□ 0.47
SGCEO43556 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC18.01■□□□□ 0.47
SGCEO43556 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC18.01■□□□□ 0.47
SGCEO43556 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
SGCEO43556 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SGCEO43556 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
SGCEO43556 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SGCEO43556 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SGCEO43556 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SGCEO43556 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SGCEO43556 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SGCEO43556 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SGCEO43556 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SGCEO43556 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SGCEO43556 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
SGCEO43556 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC18■□□□□ 0.47
SGCEO43556 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
SGCEO43556 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SGCEO43556 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
SGCEO43556 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC18■□□□□ 0.47
SGCEO43556 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
SGCEO43556 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SGCEO43556 AC091799.1-201ENST00000422823 811 ntBASIC18■□□□□ 0.47
SGCEO43556 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC18■□□□□ 0.47
SGCEO43556 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC18■□□□□ 0.47
SGCEO43556 BRI3-207ENST00000539286 699 ntTSL 2 BASIC18■□□□□ 0.47
SGCEO43556 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
SGCEO43556 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC18■□□□□ 0.47
SGCEO43556 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC18■□□□□ 0.47
SGCEO43556 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC18■□□□□ 0.47
SGCEO43556 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
SGCEO43556 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC18■□□□□ 0.47
SGCEO43556 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC18■□□□□ 0.47
SGCEO43556 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC18■□□□□ 0.47
SGCEO43556 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
SGCEO43556 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SGCEO43556 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms