Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC28BQ9BUN5 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC28BQ9BUN5 AP004607.4-201ENST00000530158 1459 ntBASIC19.92■□□□□ 0.78
CCDC28BQ9BUN5 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC28BQ9BUN5 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC28BQ9BUN5 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC19.92■□□□□ 0.78
CCDC28BQ9BUN5 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC19.92■□□□□ 0.78
CCDC28BQ9BUN5 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC28BQ9BUN5 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC19.92■□□□□ 0.78
CCDC28BQ9BUN5 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
CCDC28BQ9BUN5 AC233992.3-201ENST00000607491 485 ntBASIC19.92■□□□□ 0.78
CCDC28BQ9BUN5 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC19.92■□□□□ 0.78
CCDC28BQ9BUN5 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
CCDC28BQ9BUN5 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
CCDC28BQ9BUN5 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC28BQ9BUN5 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC19.91■□□□□ 0.78
CCDC28BQ9BUN5 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC28BQ9BUN5 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC19.91■□□□□ 0.78
CCDC28BQ9BUN5 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC28BQ9BUN5 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC28BQ9BUN5 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC19.91■□□□□ 0.78
CCDC28BQ9BUN5 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC19.91■□□□□ 0.78
CCDC28BQ9BUN5 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
CCDC28BQ9BUN5 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
CCDC28BQ9BUN5 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC28BQ9BUN5 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
CCDC28BQ9BUN5 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC28BQ9BUN5 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC19.91■□□□□ 0.78
CCDC28BQ9BUN5 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC28BQ9BUN5 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC19.91■□□□□ 0.78
CCDC28BQ9BUN5 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC28BQ9BUN5 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC19.91■□□□□ 0.78
CCDC28BQ9BUN5 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC28BQ9BUN5 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC28BQ9BUN5 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC28BQ9BUN5 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC28BQ9BUN5 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC28BQ9BUN5 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC19.91■□□□□ 0.78
CCDC28BQ9BUN5 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC28BQ9BUN5 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC19.9■□□□□ 0.78
CCDC28BQ9BUN5 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC19.9■□□□□ 0.78
CCDC28BQ9BUN5 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC28BQ9BUN5 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC28BQ9BUN5 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC28BQ9BUN5 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC19.9■□□□□ 0.78
CCDC28BQ9BUN5 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC19.9■□□□□ 0.78
CCDC28BQ9BUN5 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC28BQ9BUN5 EEF1DP3-203ENST00000566025 782 ntBASIC19.9■□□□□ 0.78
CCDC28BQ9BUN5 AC053503.5-201ENST00000601508 636 ntBASIC19.9■□□□□ 0.78
CCDC28BQ9BUN5 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC19.9■□□□□ 0.78
CCDC28BQ9BUN5 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC28BQ9BUN5 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC28BQ9BUN5 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC28BQ9BUN5 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC28BQ9BUN5 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC28BQ9BUN5 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC28BQ9BUN5 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC28BQ9BUN5 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC28BQ9BUN5 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC28BQ9BUN5 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC28BQ9BUN5 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC28BQ9BUN5 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
CCDC28BQ9BUN5 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC28BQ9BUN5 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC28BQ9BUN5 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
CCDC28BQ9BUN5 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC28BQ9BUN5 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC28BQ9BUN5 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC28BQ9BUN5 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
CCDC28BQ9BUN5 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC28BQ9BUN5 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC19.89■□□□□ 0.77
CCDC28BQ9BUN5 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC19.89■□□□□ 0.77
CCDC28BQ9BUN5 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC28BQ9BUN5 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC19.89■□□□□ 0.77
CCDC28BQ9BUN5 AC126544.1-201ENST00000580842 1059 ntBASIC19.89■□□□□ 0.77
CCDC28BQ9BUN5 TRIR-202ENST00000588213 841 ntTSL 3 BASIC19.89■□□□□ 0.77
CCDC28BQ9BUN5 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC19.89■□□□□ 0.77
CCDC28BQ9BUN5 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC28BQ9BUN5 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC28BQ9BUN5 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC28BQ9BUN5 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC28BQ9BUN5 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
CCDC28BQ9BUN5 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
CCDC28BQ9BUN5 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC28BQ9BUN5 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC28BQ9BUN5 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC28BQ9BUN5 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC19.88■□□□□ 0.77
CCDC28BQ9BUN5 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC19.88■□□□□ 0.77
CCDC28BQ9BUN5 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC28BQ9BUN5 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC28BQ9BUN5 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC28BQ9BUN5 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC28BQ9BUN5 MIR4767-201ENST00000582827 78 ntBASIC19.88■□□□□ 0.77
CCDC28BQ9BUN5 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC28BQ9BUN5 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC28BQ9BUN5 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC28BQ9BUN5 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC28BQ9BUN5 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC19.88■□□□□ 0.77
CCDC28BQ9BUN5 AC026471.1-201ENST00000564629 3026 ntBASIC19.88■□□□□ 0.77
CCDC28BQ9BUN5 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC19.88■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms