Protein–RNA interactions for Protein: Q96PY6

NEK1, Serine/threonine-protein kinase Nek1, humanhuman

Predictions only

Length 1,258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK1Q96PY6 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC24.3■■□□□ 1.48
NEK1Q96PY6 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC24.3■■□□□ 1.48
NEK1Q96PY6 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC24.3■■□□□ 1.48
NEK1Q96PY6 AC007322.4-201ENST00000509611 723 ntBASIC24.3■■□□□ 1.48
NEK1Q96PY6 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC24.3■■□□□ 1.48
NEK1Q96PY6 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC24.3■■□□□ 1.48
NEK1Q96PY6 AL591742.1-201ENST00000604433 565 ntBASIC24.3■■□□□ 1.48
NEK1Q96PY6 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC24.3■■□□□ 1.48
NEK1Q96PY6 AC013268.1-206ENST00000638368 961 ntBASIC24.3■■□□□ 1.48
NEK1Q96PY6 AC112229.1-201ENST00000639295 961 ntBASIC24.3■■□□□ 1.48
NEK1Q96PY6 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
NEK1Q96PY6 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC24.3■■□□□ 1.48
NEK1Q96PY6 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
NEK1Q96PY6 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC24.29■■□□□ 1.48
NEK1Q96PY6 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
NEK1Q96PY6 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
NEK1Q96PY6 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC24.29■■□□□ 1.48
NEK1Q96PY6 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC24.29■■□□□ 1.48
NEK1Q96PY6 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
NEK1Q96PY6 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
NEK1Q96PY6 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC24.29■■□□□ 1.48
NEK1Q96PY6 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
NEK1Q96PY6 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
NEK1Q96PY6 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
NEK1Q96PY6 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC24.29■■□□□ 1.48
NEK1Q96PY6 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC24.29■■□□□ 1.48
NEK1Q96PY6 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC24.29■■□□□ 1.48
NEK1Q96PY6 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC24.29■■□□□ 1.48
NEK1Q96PY6 PLLP-204ENST00000569059 665 ntTSL 3 BASIC24.29■■□□□ 1.48
NEK1Q96PY6 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC24.29■■□□□ 1.48
NEK1Q96PY6 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
NEK1Q96PY6 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC24.29■■□□□ 1.48
NEK1Q96PY6 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
NEK1Q96PY6 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
NEK1Q96PY6 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC24.29■■□□□ 1.48
NEK1Q96PY6 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC24.29■■□□□ 1.48
NEK1Q96PY6 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC24.29■■□□□ 1.48
NEK1Q96PY6 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC24.29■■□□□ 1.48
NEK1Q96PY6 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
NEK1Q96PY6 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC24.28■■□□□ 1.48
NEK1Q96PY6 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
NEK1Q96PY6 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC24.28■■□□□ 1.48
NEK1Q96PY6 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
NEK1Q96PY6 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC24.28■■□□□ 1.48
NEK1Q96PY6 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
NEK1Q96PY6 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
NEK1Q96PY6 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC24.28■■□□□ 1.48
NEK1Q96PY6 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC24.28■■□□□ 1.48
NEK1Q96PY6 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
NEK1Q96PY6 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC24.28■■□□□ 1.48
NEK1Q96PY6 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC24.27■■□□□ 1.48
NEK1Q96PY6 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC24.27■■□□□ 1.48
NEK1Q96PY6 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
NEK1Q96PY6 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC24.27■■□□□ 1.48
NEK1Q96PY6 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC24.27■■□□□ 1.48
NEK1Q96PY6 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
NEK1Q96PY6 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
NEK1Q96PY6 CNN2P6-201ENST00000439038 900 ntBASIC24.27■■□□□ 1.48
NEK1Q96PY6 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
NEK1Q96PY6 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
NEK1Q96PY6 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
NEK1Q96PY6 BID-214ENST00000617586 542 ntTSL 5 BASIC24.27■■□□□ 1.48
NEK1Q96PY6 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
NEK1Q96PY6 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC24.27■■□□□ 1.48
NEK1Q96PY6 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC24.27■■□□□ 1.48
NEK1Q96PY6 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC24.27■■□□□ 1.48
NEK1Q96PY6 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC24.27■■□□□ 1.48
NEK1Q96PY6 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
NEK1Q96PY6 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
NEK1Q96PY6 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
NEK1Q96PY6 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC24.26■■□□□ 1.47
NEK1Q96PY6 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
NEK1Q96PY6 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC24.26■■□□□ 1.47
NEK1Q96PY6 AC020907.5-201ENST00000624372 1936 ntBASIC24.26■■□□□ 1.47
NEK1Q96PY6 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
NEK1Q96PY6 VMO1-204ENST00000441199 741 ntTSL 2 BASIC24.26■■□□□ 1.47
NEK1Q96PY6 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC24.26■■□□□ 1.47
NEK1Q96PY6 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC24.26■■□□□ 1.47
NEK1Q96PY6 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
NEK1Q96PY6 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC24.26■■□□□ 1.47
NEK1Q96PY6 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC24.26■■□□□ 1.47
NEK1Q96PY6 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
NEK1Q96PY6 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC24.25■■□□□ 1.47
NEK1Q96PY6 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC24.25■■□□□ 1.47
NEK1Q96PY6 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC24.25■■□□□ 1.47
NEK1Q96PY6 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
NEK1Q96PY6 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
NEK1Q96PY6 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC24.25■■□□□ 1.47
NEK1Q96PY6 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
NEK1Q96PY6 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC24.25■■□□□ 1.47
NEK1Q96PY6 AC016405.3-201ENST00000607710 860 ntBASIC24.25■■□□□ 1.47
NEK1Q96PY6 FAM21FP-204ENST00000608637 956 ntBASIC24.25■■□□□ 1.47
NEK1Q96PY6 AC092437.1-201ENST00000624794 1048 ntBASIC24.25■■□□□ 1.47
NEK1Q96PY6 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC24.25■■□□□ 1.47
NEK1Q96PY6 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC24.25■■□□□ 1.47
NEK1Q96PY6 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC24.25■■□□□ 1.47
NEK1Q96PY6 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
NEK1Q96PY6 GAS2L1P2-201ENST00000436355 1356 ntBASIC24.25■■□□□ 1.47
NEK1Q96PY6 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
NEK1Q96PY6 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC24.25■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms