Protein–RNA interactions for Protein: Q8IX30

SCUBE3, Signal peptide, CUB and EGF-like domain-containing protein 3, humanhuman

Predictions only

Length 993 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCUBE3Q8IX30 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC21.59■■□□□ 1.05
SCUBE3Q8IX30 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SCUBE3Q8IX30 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SCUBE3Q8IX30 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC21.59■■□□□ 1.05
SCUBE3Q8IX30 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SCUBE3Q8IX30 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC21.59■■□□□ 1.05
SCUBE3Q8IX30 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
SCUBE3Q8IX30 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SCUBE3Q8IX30 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC21.58■■□□□ 1.05
SCUBE3Q8IX30 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SCUBE3Q8IX30 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
SCUBE3Q8IX30 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SCUBE3Q8IX30 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SCUBE3Q8IX30 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC21.58■■□□□ 1.05
SCUBE3Q8IX30 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
SCUBE3Q8IX30 AC093787.1-201ENST00000450396 207 ntBASIC21.58■■□□□ 1.05
SCUBE3Q8IX30 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC21.58■■□□□ 1.05
SCUBE3Q8IX30 AC083906.2-201ENST00000511578 360 ntBASIC21.58■■□□□ 1.05
SCUBE3Q8IX30 GXYLT1P5-201ENST00000614548 1189 ntBASIC21.58■■□□□ 1.05
SCUBE3Q8IX30 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.04
SCUBE3Q8IX30 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
SCUBE3Q8IX30 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
SCUBE3Q8IX30 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC21.58■■□□□ 1.04
SCUBE3Q8IX30 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.04
SCUBE3Q8IX30 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC21.58■■□□□ 1.04
SCUBE3Q8IX30 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.04
SCUBE3Q8IX30 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.04
SCUBE3Q8IX30 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC21.57■■□□□ 1.04
SCUBE3Q8IX30 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SCUBE3Q8IX30 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SCUBE3Q8IX30 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SCUBE3Q8IX30 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC21.57■■□□□ 1.04
SCUBE3Q8IX30 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
SCUBE3Q8IX30 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC21.57■■□□□ 1.04
SCUBE3Q8IX30 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC21.57■■□□□ 1.04
SCUBE3Q8IX30 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SCUBE3Q8IX30 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC21.57■■□□□ 1.04
SCUBE3Q8IX30 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
SCUBE3Q8IX30 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SCUBE3Q8IX30 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SCUBE3Q8IX30 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC21.56■■□□□ 1.04
SCUBE3Q8IX30 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC21.56■■□□□ 1.04
SCUBE3Q8IX30 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC21.56■■□□□ 1.04
SCUBE3Q8IX30 FP700111.2-201ENST00000619190 1892 ntBASIC21.56■■□□□ 1.04
SCUBE3Q8IX30 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SCUBE3Q8IX30 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
SCUBE3Q8IX30 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC21.56■■□□□ 1.04
SCUBE3Q8IX30 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
SCUBE3Q8IX30 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
SCUBE3Q8IX30 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC21.56■■□□□ 1.04
SCUBE3Q8IX30 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SCUBE3Q8IX30 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
SCUBE3Q8IX30 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC21.56■■□□□ 1.04
SCUBE3Q8IX30 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SCUBE3Q8IX30 METTL15-202ENST00000403099 795 ntTSL 5 BASIC21.56■■□□□ 1.04
SCUBE3Q8IX30 NCF1B-203ENST00000435988 1254 ntBASIC21.56■■□□□ 1.04
SCUBE3Q8IX30 AF201337.1-201ENST00000520239 748 ntBASIC21.56■■□□□ 1.04
SCUBE3Q8IX30 AC105036.2-201ENST00000569468 176 ntBASIC21.56■■□□□ 1.04
SCUBE3Q8IX30 WT1-AS_3.1-201ENST00000613262 234 ntBASIC21.56■■□□□ 1.04
SCUBE3Q8IX30 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC21.56■■□□□ 1.04
SCUBE3Q8IX30 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
SCUBE3Q8IX30 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC21.56■■□□□ 1.04
SCUBE3Q8IX30 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SCUBE3Q8IX30 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC21.56■■□□□ 1.04
SCUBE3Q8IX30 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
SCUBE3Q8IX30 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
SCUBE3Q8IX30 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SCUBE3Q8IX30 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SCUBE3Q8IX30 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
SCUBE3Q8IX30 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
SCUBE3Q8IX30 AL512625.2-201ENST00000417533 625 ntBASIC21.55■■□□□ 1.04
SCUBE3Q8IX30 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC21.55■■□□□ 1.04
SCUBE3Q8IX30 OAS3-207ENST00000551007 998 ntTSL 2 BASIC21.55■■□□□ 1.04
SCUBE3Q8IX30 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SCUBE3Q8IX30 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC21.55■■□□□ 1.04
SCUBE3Q8IX30 AC007225.1-201ENST00000566331 1836 ntBASIC21.55■■□□□ 1.04
SCUBE3Q8IX30 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SCUBE3Q8IX30 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SCUBE3Q8IX30 AC010980.2-201ENST00000587099 1412 ntBASIC21.55■■□□□ 1.04
SCUBE3Q8IX30 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
SCUBE3Q8IX30 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC21.54■■□□□ 1.04
SCUBE3Q8IX30 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC21.54■■□□□ 1.04
SCUBE3Q8IX30 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
SCUBE3Q8IX30 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SCUBE3Q8IX30 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC21.54■■□□□ 1.04
SCUBE3Q8IX30 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
SCUBE3Q8IX30 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC21.54■■□□□ 1.04
SCUBE3Q8IX30 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
SCUBE3Q8IX30 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SCUBE3Q8IX30 ME2-216ENST00000639850 2331 ntTSL 5 BASIC21.54■■□□□ 1.04
SCUBE3Q8IX30 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC21.54■■□□□ 1.04
SCUBE3Q8IX30 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC21.54■■□□□ 1.04
SCUBE3Q8IX30 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
SCUBE3Q8IX30 AL121603.2-201ENST00000557373 2117 ntBASIC21.54■■□□□ 1.04
SCUBE3Q8IX30 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC21.54■■□□□ 1.04
SCUBE3Q8IX30 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
SCUBE3Q8IX30 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
SCUBE3Q8IX30 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SCUBE3Q8IX30 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SCUBE3Q8IX30 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms