Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC19.22■□□□□ 0.67
RFX3P48380 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
RFX3P48380 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC19.22■□□□□ 0.67
RFX3P48380 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
RFX3P48380 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RFX3P48380 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RFX3P48380 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
RFX3P48380 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
RFX3P48380 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC19.22■□□□□ 0.67
RFX3P48380 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC19.22■□□□□ 0.67
RFX3P48380 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC19.22■□□□□ 0.67
RFX3P48380 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RFX3P48380 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
RFX3P48380 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC19.21■□□□□ 0.67
RFX3P48380 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
RFX3P48380 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC19.21■□□□□ 0.67
RFX3P48380 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RFX3P48380 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
RFX3P48380 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
RFX3P48380 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
RFX3P48380 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC19.21■□□□□ 0.67
RFX3P48380 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
RFX3P48380 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC19.21■□□□□ 0.67
RFX3P48380 KRT18P20-201ENST00000548986 1279 ntBASIC19.21■□□□□ 0.67
RFX3P48380 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC19.21■□□□□ 0.67
RFX3P48380 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC19.21■□□□□ 0.67
RFX3P48380 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
RFX3P48380 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
RFX3P48380 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC19.21■□□□□ 0.67
RFX3P48380 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC19.21■□□□□ 0.67
RFX3P48380 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
RFX3P48380 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RFX3P48380 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RFX3P48380 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RFX3P48380 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
RFX3P48380 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
RFX3P48380 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
RFX3P48380 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RFX3P48380 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC19.2■□□□□ 0.66
RFX3P48380 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
RFX3P48380 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC19.2■□□□□ 0.66
RFX3P48380 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RFX3P48380 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC19.2■□□□□ 0.66
RFX3P48380 SPI1-203ENST00000533030 661 ntTSL 2 BASIC19.2■□□□□ 0.66
RFX3P48380 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
RFX3P48380 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
RFX3P48380 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RFX3P48380 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
RFX3P48380 AC121338.2-201ENST00000622535 1744 ntBASIC19.2■□□□□ 0.66
RFX3P48380 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
RFX3P48380 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
RFX3P48380 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFX3P48380 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
RFX3P48380 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC19.19■□□□□ 0.66
RFX3P48380 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFX3P48380 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFX3P48380 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
RFX3P48380 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC19.19■□□□□ 0.66
RFX3P48380 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC19.19■□□□□ 0.66
RFX3P48380 MYCNOS-205ENST00000641950 531 ntBASIC19.19■□□□□ 0.66
RFX3P48380 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
RFX3P48380 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFX3P48380 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC19.19■□□□□ 0.66
RFX3P48380 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFX3P48380 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFX3P48380 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFX3P48380 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC19.19■□□□□ 0.66
RFX3P48380 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
RFX3P48380 PLK5-205ENST00000642079 1969 ntBASIC19.19■□□□□ 0.66
RFX3P48380 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
RFX3P48380 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RFX3P48380 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC19.18■□□□□ 0.66
RFX3P48380 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RFX3P48380 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RFX3P48380 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC19.18■□□□□ 0.66
RFX3P48380 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
RFX3P48380 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
RFX3P48380 BMP1-204ENST00000397814 836 ntTSL 4 BASIC19.18■□□□□ 0.66
RFX3P48380 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC19.18■□□□□ 0.66
RFX3P48380 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC19.18■□□□□ 0.66
RFX3P48380 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
RFX3P48380 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
RFX3P48380 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RFX3P48380 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC19.18■□□□□ 0.66
RFX3P48380 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
RFX3P48380 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
RFX3P48380 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RFX3P48380 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RFX3P48380 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RFX3P48380 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RFX3P48380 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC19.17■□□□□ 0.66
RFX3P48380 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
RFX3P48380 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC19.17■□□□□ 0.66
RFX3P48380 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RFX3P48380 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RFX3P48380 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RFX3P48380 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC19.17■□□□□ 0.66
RFX3P48380 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC19.17■□□□□ 0.66
RFX3P48380 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
RFX3P48380 FGF8-207ENST00000618991 856 ntTSL 3 BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms