Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC24.23■■□□□ 1.47
HMGB1P09429 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC24.23■■□□□ 1.47
HMGB1P09429 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC24.23■■□□□ 1.47
HMGB1P09429 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
HMGB1P09429 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
HMGB1P09429 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC24.23■■□□□ 1.47
HMGB1P09429 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
HMGB1P09429 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC24.22■■□□□ 1.47
HMGB1P09429 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC24.22■■□□□ 1.47
HMGB1P09429 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC24.22■■□□□ 1.47
HMGB1P09429 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC24.22■■□□□ 1.47
HMGB1P09429 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
HMGB1P09429 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC24.22■■□□□ 1.47
HMGB1P09429 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
HMGB1P09429 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
HMGB1P09429 AC020907.5-201ENST00000624372 1936 ntBASIC24.22■■□□□ 1.47
HMGB1P09429 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
HMGB1P09429 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC24.22■■□□□ 1.47
HMGB1P09429 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC24.22■■□□□ 1.47
HMGB1P09429 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC24.22■■□□□ 1.47
HMGB1P09429 BMP1-204ENST00000397814 836 ntTSL 4 BASIC24.22■■□□□ 1.47
HMGB1P09429 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC24.22■■□□□ 1.47
HMGB1P09429 PBX1-209ENST00000485769 834 ntTSL 2 BASIC24.22■■□□□ 1.47
HMGB1P09429 CASP6-205ENST00000505486 538 ntTSL 4 BASIC24.22■■□□□ 1.47
HMGB1P09429 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
HMGB1P09429 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
HMGB1P09429 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC24.22■■□□□ 1.47
HMGB1P09429 AL121603.2-201ENST00000557373 2117 ntBASIC24.22■■□□□ 1.47
HMGB1P09429 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC24.22■■□□□ 1.47
HMGB1P09429 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC24.21■■□□□ 1.47
HMGB1P09429 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC24.21■■□□□ 1.47
HMGB1P09429 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
HMGB1P09429 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC24.21■■□□□ 1.47
HMGB1P09429 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
HMGB1P09429 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC24.21■■□□□ 1.47
HMGB1P09429 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
HMGB1P09429 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC24.21■■□□□ 1.47
HMGB1P09429 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
HMGB1P09429 DUX4L16-201ENST00000555130 1264 ntBASIC24.21■■□□□ 1.47
HMGB1P09429 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC24.21■■□□□ 1.47
HMGB1P09429 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC24.21■■□□□ 1.47
HMGB1P09429 AC011767.1-201ENST00000617410 1153 ntBASIC24.21■■□□□ 1.47
HMGB1P09429 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
HMGB1P09429 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
HMGB1P09429 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC24.2■■□□□ 1.47
HMGB1P09429 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC24.2■■□□□ 1.47
HMGB1P09429 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.47
HMGB1P09429 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC24.2■■□□□ 1.46
HMGB1P09429 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
HMGB1P09429 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC24.2■■□□□ 1.46
HMGB1P09429 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC24.2■■□□□ 1.46
HMGB1P09429 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC24.2■■□□□ 1.46
HMGB1P09429 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC24.2■■□□□ 1.46
HMGB1P09429 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC24.2■■□□□ 1.46
HMGB1P09429 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC24.2■■□□□ 1.46
HMGB1P09429 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC24.2■■□□□ 1.46
HMGB1P09429 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC24.2■■□□□ 1.46
HMGB1P09429 AC022517.1-201ENST00000592429 346 ntBASIC24.2■■□□□ 1.46
HMGB1P09429 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC24.2■■□□□ 1.46
HMGB1P09429 BID-214ENST00000617586 542 ntTSL 5 BASIC24.2■■□□□ 1.46
HMGB1P09429 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC24.2■■□□□ 1.46
HMGB1P09429 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC24.2■■□□□ 1.46
HMGB1P09429 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC24.2■■□□□ 1.46
HMGB1P09429 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
HMGB1P09429 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC24.19■■□□□ 1.46
HMGB1P09429 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC24.19■■□□□ 1.46
HMGB1P09429 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC24.19■■□□□ 1.46
HMGB1P09429 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
HMGB1P09429 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC24.19■■□□□ 1.46
HMGB1P09429 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC24.19■■□□□ 1.46
HMGB1P09429 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC24.19■■□□□ 1.46
HMGB1P09429 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC24.19■■□□□ 1.46
HMGB1P09429 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
HMGB1P09429 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
HMGB1P09429 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC24.19■■□□□ 1.46
HMGB1P09429 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
HMGB1P09429 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC24.18■■□□□ 1.46
HMGB1P09429 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
HMGB1P09429 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC24.18■■□□□ 1.46
HMGB1P09429 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
HMGB1P09429 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC24.18■■□□□ 1.46
HMGB1P09429 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC24.18■■□□□ 1.46
HMGB1P09429 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC24.18■■□□□ 1.46
HMGB1P09429 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
HMGB1P09429 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
HMGB1P09429 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC24.18■■□□□ 1.46
HMGB1P09429 CNN2P6-201ENST00000439038 900 ntBASIC24.18■■□□□ 1.46
HMGB1P09429 VMO1-204ENST00000441199 741 ntTSL 2 BASIC24.18■■□□□ 1.46
HMGB1P09429 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
HMGB1P09429 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC24.18■■□□□ 1.46
HMGB1P09429 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC24.18■■□□□ 1.46
HMGB1P09429 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC24.18■■□□□ 1.46
HMGB1P09429 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC24.18■■□□□ 1.46
HMGB1P09429 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
HMGB1P09429 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
HMGB1P09429 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
HMGB1P09429 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
HMGB1P09429 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
HMGB1P09429 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
HMGB1P09429 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms