Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
VPS4BO75351 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
VPS4BO75351 STX7-201ENST00000367937 1090 ntTSL 5 BASIC20.08■□□□□ 0.81
VPS4BO75351 METTL26-203ENST00000397664 604 ntTSL 2 BASIC20.08■□□□□ 0.81
VPS4BO75351 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
VPS4BO75351 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
VPS4BO75351 MAP2K4P1-201ENST00000438453 1195 ntBASIC20.08■□□□□ 0.81
VPS4BO75351 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
VPS4BO75351 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
VPS4BO75351 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
VPS4BO75351 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
VPS4BO75351 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.8
VPS4BO75351 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
VPS4BO75351 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
VPS4BO75351 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC20.08■□□□□ 0.8
VPS4BO75351 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
VPS4BO75351 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
VPS4BO75351 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
VPS4BO75351 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
VPS4BO75351 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
VPS4BO75351 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS4BO75351 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
VPS4BO75351 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
VPS4BO75351 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
VPS4BO75351 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS4BO75351 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC20.07■□□□□ 0.8
VPS4BO75351 COX20-201ENST00000366528 568 ntTSL 2 BASIC20.07■□□□□ 0.8
VPS4BO75351 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC20.07■□□□□ 0.8
VPS4BO75351 MFF-208ENST00000409616 1247 ntTSL 5 BASIC20.07■□□□□ 0.8
VPS4BO75351 RNF146-206ENST00000480444 843 ntTSL 2 BASIC20.07■□□□□ 0.8
VPS4BO75351 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC20.07■□□□□ 0.8
VPS4BO75351 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS4BO75351 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC20.07■□□□□ 0.8
VPS4BO75351 AC020907.5-201ENST00000624372 1936 ntBASIC20.07■□□□□ 0.8
VPS4BO75351 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC20.07■□□□□ 0.8
VPS4BO75351 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC20.07■□□□□ 0.8
VPS4BO75351 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS4BO75351 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS4BO75351 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VPS4BO75351 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
VPS4BO75351 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC20.06■□□□□ 0.8
VPS4BO75351 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VPS4BO75351 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC20.06■□□□□ 0.8
VPS4BO75351 CD99P1-205ENST00000527459 561 ntBASIC20.06■□□□□ 0.8
VPS4BO75351 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC20.06■□□□□ 0.8
VPS4BO75351 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC20.06■□□□□ 0.8
VPS4BO75351 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC20.06■□□□□ 0.8
VPS4BO75351 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC20.06■□□□□ 0.8
VPS4BO75351 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VPS4BO75351 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC20.06■□□□□ 0.8
VPS4BO75351 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
VPS4BO75351 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VPS4BO75351 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
VPS4BO75351 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
VPS4BO75351 AC027702.1-201ENST00000563810 1770 ntBASIC20.06■□□□□ 0.8
VPS4BO75351 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
VPS4BO75351 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC20.05■□□□□ 0.8
VPS4BO75351 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VPS4BO75351 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VPS4BO75351 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
VPS4BO75351 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC20.05■□□□□ 0.8
VPS4BO75351 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC20.05■□□□□ 0.8
VPS4BO75351 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC20.05■□□□□ 0.8
VPS4BO75351 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
VPS4BO75351 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
VPS4BO75351 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC20.05■□□□□ 0.8
VPS4BO75351 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VPS4BO75351 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC20.05■□□□□ 0.8
VPS4BO75351 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS4BO75351 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS4BO75351 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS4BO75351 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS4BO75351 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC20.04■□□□□ 0.8
VPS4BO75351 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS4BO75351 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
VPS4BO75351 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS4BO75351 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS4BO75351 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
VPS4BO75351 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
VPS4BO75351 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC20.04■□□□□ 0.8
VPS4BO75351 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC20.04■□□□□ 0.8
VPS4BO75351 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS4BO75351 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS4BO75351 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS4BO75351 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS4BO75351 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
VPS4BO75351 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
VPS4BO75351 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS4BO75351 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
VPS4BO75351 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS4BO75351 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
VPS4BO75351 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
VPS4BO75351 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC20.03■□□□□ 0.8
VPS4BO75351 BX005040.4-201ENST00000637145 1518 ntBASIC20.03■□□□□ 0.8
VPS4BO75351 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC20.03■□□□□ 0.8
VPS4BO75351 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
VPS4BO75351 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS4BO75351 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS4BO75351 NCF1B-203ENST00000435988 1254 ntBASIC20.03■□□□□ 0.8
VPS4BO75351 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms