Protein–RNA interactions for Protein: A0A0B4J238

TRAV1-2, T-cell receptor alpha variable 1-2 (Fragment), humanhuman

Predictions only

Length 106 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-2A0A0B4J238 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRAV1-2A0A0B4J238 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRAV1-2A0A0B4J238 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
TRAV1-2A0A0B4J238 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
TRAV1-2A0A0B4J238 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC17.83■□□□□ 0.45
TRAV1-2A0A0B4J238 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
TRAV1-2A0A0B4J238 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC17.83■□□□□ 0.45
TRAV1-2A0A0B4J238 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.45
TRAV1-2A0A0B4J238 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
TRAV1-2A0A0B4J238 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
TRAV1-2A0A0B4J238 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.45
TRAV1-2A0A0B4J238 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.45
TRAV1-2A0A0B4J238 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
TRAV1-2A0A0B4J238 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
TRAV1-2A0A0B4J238 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
TRAV1-2A0A0B4J238 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC17.83■□□□□ 0.44
TRAV1-2A0A0B4J238 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
TRAV1-2A0A0B4J238 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
TRAV1-2A0A0B4J238 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
TRAV1-2A0A0B4J238 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC17.83■□□□□ 0.44
TRAV1-2A0A0B4J238 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
TRAV1-2A0A0B4J238 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
TRAV1-2A0A0B4J238 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC17.82■□□□□ 0.44
TRAV1-2A0A0B4J238 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
TRAV1-2A0A0B4J238 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRAV1-2A0A0B4J238 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC17.82■□□□□ 0.44
TRAV1-2A0A0B4J238 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRAV1-2A0A0B4J238 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
TRAV1-2A0A0B4J238 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
TRAV1-2A0A0B4J238 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC17.82■□□□□ 0.44
TRAV1-2A0A0B4J238 AL158211.5-201ENST00000623583 2518 ntBASIC17.82■□□□□ 0.44
TRAV1-2A0A0B4J238 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRAV1-2A0A0B4J238 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRAV1-2A0A0B4J238 AC005224.4-201ENST00000583262 1652 ntBASIC17.82■□□□□ 0.44
TRAV1-2A0A0B4J238 LBX2-AS1-202ENST00000603175 2083 ntBASIC17.82■□□□□ 0.44
TRAV1-2A0A0B4J238 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
TRAV1-2A0A0B4J238 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC17.82■□□□□ 0.44
TRAV1-2A0A0B4J238 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC17.82■□□□□ 0.44
TRAV1-2A0A0B4J238 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
TRAV1-2A0A0B4J238 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRAV1-2A0A0B4J238 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
TRAV1-2A0A0B4J238 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRAV1-2A0A0B4J238 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRAV1-2A0A0B4J238 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRAV1-2A0A0B4J238 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRAV1-2A0A0B4J238 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRAV1-2A0A0B4J238 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRAV1-2A0A0B4J238 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRAV1-2A0A0B4J238 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRAV1-2A0A0B4J238 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
TRAV1-2A0A0B4J238 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
TRAV1-2A0A0B4J238 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRAV1-2A0A0B4J238 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRAV1-2A0A0B4J238 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
TRAV1-2A0A0B4J238 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRAV1-2A0A0B4J238 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRAV1-2A0A0B4J238 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRAV1-2A0A0B4J238 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC17.81■□□□□ 0.44
TRAV1-2A0A0B4J238 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
TRAV1-2A0A0B4J238 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC17.81■□□□□ 0.44
TRAV1-2A0A0B4J238 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC17.81■□□□□ 0.44
TRAV1-2A0A0B4J238 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC17.81■□□□□ 0.44
TRAV1-2A0A0B4J238 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRAV1-2A0A0B4J238 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRAV1-2A0A0B4J238 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
TRAV1-2A0A0B4J238 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRAV1-2A0A0B4J238 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRAV1-2A0A0B4J238 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC17.81■□□□□ 0.44
TRAV1-2A0A0B4J238 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
TRAV1-2A0A0B4J238 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRAV1-2A0A0B4J238 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC17.8■□□□□ 0.44
TRAV1-2A0A0B4J238 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC17.8■□□□□ 0.44
TRAV1-2A0A0B4J238 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
TRAV1-2A0A0B4J238 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC17.8■□□□□ 0.44
TRAV1-2A0A0B4J238 OR2A1-AS1-204ENST00000470435 602 ntBASIC17.8■□□□□ 0.44
TRAV1-2A0A0B4J238 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC17.8■□□□□ 0.44
TRAV1-2A0A0B4J238 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TRAV1-2A0A0B4J238 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC17.8■□□□□ 0.44
TRAV1-2A0A0B4J238 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRAV1-2A0A0B4J238 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TRAV1-2A0A0B4J238 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC17.8■□□□□ 0.44
TRAV1-2A0A0B4J238 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TRAV1-2A0A0B4J238 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC17.8■□□□□ 0.44
TRAV1-2A0A0B4J238 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TRAV1-2A0A0B4J238 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRAV1-2A0A0B4J238 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRAV1-2A0A0B4J238 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
TRAV1-2A0A0B4J238 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRAV1-2A0A0B4J238 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRAV1-2A0A0B4J238 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC17.79■□□□□ 0.44
TRAV1-2A0A0B4J238 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC17.79■□□□□ 0.44
TRAV1-2A0A0B4J238 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRAV1-2A0A0B4J238 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
TRAV1-2A0A0B4J238 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC17.79■□□□□ 0.44
TRAV1-2A0A0B4J238 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRAV1-2A0A0B4J238 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRAV1-2A0A0B4J238 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC17.79■□□□□ 0.44
TRAV1-2A0A0B4J238 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC17.79■□□□□ 0.44
TRAV1-2A0A0B4J238 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRAV1-2A0A0B4J238 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms