Protein–RNA interactions for Protein: Q9NWW5

CLN6, Ceroid-lipofuscinosis neuronal protein 6, humanhuman

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6Q9NWW5 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC18.72■□□□□ 0.59
CLN6Q9NWW5 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
CLN6Q9NWW5 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CLN6Q9NWW5 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLN6Q9NWW5 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
CLN6Q9NWW5 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC18.71■□□□□ 0.59
CLN6Q9NWW5 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLN6Q9NWW5 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC18.71■□□□□ 0.59
CLN6Q9NWW5 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLN6Q9NWW5 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLN6Q9NWW5 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLN6Q9NWW5 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLN6Q9NWW5 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC18.71■□□□□ 0.59
CLN6Q9NWW5 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CLN6Q9NWW5 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC18.71■□□□□ 0.59
CLN6Q9NWW5 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CLN6Q9NWW5 SF1-220ENST00000626028 704 ntTSL 2 BASIC18.71■□□□□ 0.59
CLN6Q9NWW5 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
CLN6Q9NWW5 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CLN6Q9NWW5 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC18.71■□□□□ 0.59
CLN6Q9NWW5 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLN6Q9NWW5 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLN6Q9NWW5 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLN6Q9NWW5 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CLN6Q9NWW5 SMG8-203ENST00000578922 2178 ntBASIC18.71■□□□□ 0.59
CLN6Q9NWW5 AC087289.5-201ENST00000586076 3175 ntBASIC18.71■□□□□ 0.58
CLN6Q9NWW5 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.58
CLN6Q9NWW5 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLN6Q9NWW5 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC18.7■□□□□ 0.58
CLN6Q9NWW5 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLN6Q9NWW5 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC18.7■□□□□ 0.58
CLN6Q9NWW5 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLN6Q9NWW5 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLN6Q9NWW5 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
CLN6Q9NWW5 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLN6Q9NWW5 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLN6Q9NWW5 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLN6Q9NWW5 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC18.7■□□□□ 0.58
CLN6Q9NWW5 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CLN6Q9NWW5 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CLN6Q9NWW5 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLN6Q9NWW5 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC18.7■□□□□ 0.58
CLN6Q9NWW5 TRIR-205ENST00000592273 783 ntTSL 3 BASIC18.7■□□□□ 0.58
CLN6Q9NWW5 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC18.7■□□□□ 0.58
CLN6Q9NWW5 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
CLN6Q9NWW5 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CLN6Q9NWW5 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
CLN6Q9NWW5 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLN6Q9NWW5 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC18.7■□□□□ 0.58
CLN6Q9NWW5 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC18.69■□□□□ 0.58
CLN6Q9NWW5 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CLN6Q9NWW5 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
CLN6Q9NWW5 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLN6Q9NWW5 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CLN6Q9NWW5 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLN6Q9NWW5 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLN6Q9NWW5 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLN6Q9NWW5 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CLN6Q9NWW5 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLN6Q9NWW5 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC18.69■□□□□ 0.58
CLN6Q9NWW5 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLN6Q9NWW5 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CLN6Q9NWW5 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
CLN6Q9NWW5 RPP21-222ENST00000433076 577 ntTSL 2 BASIC18.69■□□□□ 0.58
CLN6Q9NWW5 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC18.69■□□□□ 0.58
CLN6Q9NWW5 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC18.69■□□□□ 0.58
CLN6Q9NWW5 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC18.69■□□□□ 0.58
CLN6Q9NWW5 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC18.69■□□□□ 0.58
CLN6Q9NWW5 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC18.69■□□□□ 0.58
CLN6Q9NWW5 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLN6Q9NWW5 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CLN6Q9NWW5 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC18.69■□□□□ 0.58
CLN6Q9NWW5 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLN6Q9NWW5 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLN6Q9NWW5 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLN6Q9NWW5 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLN6Q9NWW5 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC18.69■□□□□ 0.58
CLN6Q9NWW5 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLN6Q9NWW5 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC18.69■□□□□ 0.58
CLN6Q9NWW5 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
CLN6Q9NWW5 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC18.68■□□□□ 0.58
CLN6Q9NWW5 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CLN6Q9NWW5 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLN6Q9NWW5 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
CLN6Q9NWW5 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC18.68■□□□□ 0.58
CLN6Q9NWW5 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLN6Q9NWW5 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CLN6Q9NWW5 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CLN6Q9NWW5 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CLN6Q9NWW5 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CLN6Q9NWW5 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC18.68■□□□□ 0.58
CLN6Q9NWW5 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC18.68■□□□□ 0.58
CLN6Q9NWW5 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
CLN6Q9NWW5 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC18.68■□□□□ 0.58
CLN6Q9NWW5 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC18.68■□□□□ 0.58
CLN6Q9NWW5 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLN6Q9NWW5 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC18.67■□□□□ 0.58
CLN6Q9NWW5 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CLN6Q9NWW5 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLN6Q9NWW5 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 86.1 ms