Protein–RNA interactions for Protein: Q9H9A6

LRRC40, Leucine-rich repeat-containing protein 40, humanhuman

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC40Q9H9A6 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC20.88■□□□□ 0.93
LRRC40Q9H9A6 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC20.88■□□□□ 0.93
LRRC40Q9H9A6 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
LRRC40Q9H9A6 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC20.88■□□□□ 0.93
LRRC40Q9H9A6 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LRRC40Q9H9A6 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
LRRC40Q9H9A6 BID-203ENST00000399765 1879 ntTSL 2 BASIC20.88■□□□□ 0.93
LRRC40Q9H9A6 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
LRRC40Q9H9A6 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
LRRC40Q9H9A6 AC073314.1-201ENST00000568729 2216 ntBASIC20.88■□□□□ 0.93
LRRC40Q9H9A6 RBM17P2-201ENST00000616397 1405 ntBASIC20.87■□□□□ 0.93
LRRC40Q9H9A6 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
LRRC40Q9H9A6 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LRRC40Q9H9A6 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
LRRC40Q9H9A6 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
LRRC40Q9H9A6 UBE2DNL-204ENST00000602536 740 ntBASIC20.87■□□□□ 0.93
LRRC40Q9H9A6 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC20.87■□□□□ 0.93
LRRC40Q9H9A6 TFG-210ENST00000620299 1289 ntTSL 5 BASIC20.87■□□□□ 0.93
LRRC40Q9H9A6 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
LRRC40Q9H9A6 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LRRC40Q9H9A6 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LRRC40Q9H9A6 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC20.87■□□□□ 0.93
LRRC40Q9H9A6 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC20.87■□□□□ 0.93
LRRC40Q9H9A6 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC20.86■□□□□ 0.93
LRRC40Q9H9A6 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
LRRC40Q9H9A6 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LRRC40Q9H9A6 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LRRC40Q9H9A6 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
LRRC40Q9H9A6 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LRRC40Q9H9A6 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC20.86■□□□□ 0.93
LRRC40Q9H9A6 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC20.86■□□□□ 0.93
LRRC40Q9H9A6 AC087623.3-201ENST00000607047 1098 ntBASIC20.86■□□□□ 0.93
LRRC40Q9H9A6 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LRRC40Q9H9A6 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
LRRC40Q9H9A6 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC20.86■□□□□ 0.93
LRRC40Q9H9A6 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
LRRC40Q9H9A6 AC092667.1-201ENST00000434301 2586 ntBASIC20.86■□□□□ 0.93
LRRC40Q9H9A6 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC20.86■□□□□ 0.93
LRRC40Q9H9A6 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LRRC40Q9H9A6 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC20.85■□□□□ 0.93
LRRC40Q9H9A6 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
LRRC40Q9H9A6 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
LRRC40Q9H9A6 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
LRRC40Q9H9A6 AC027702.1-201ENST00000563810 1770 ntBASIC20.85■□□□□ 0.93
LRRC40Q9H9A6 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC20.85■□□□□ 0.93
LRRC40Q9H9A6 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
LRRC40Q9H9A6 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
LRRC40Q9H9A6 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC20.85■□□□□ 0.93
LRRC40Q9H9A6 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC20.85■□□□□ 0.93
LRRC40Q9H9A6 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC20.85■□□□□ 0.93
LRRC40Q9H9A6 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
LRRC40Q9H9A6 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC20.85■□□□□ 0.93
LRRC40Q9H9A6 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC20.85■□□□□ 0.93
LRRC40Q9H9A6 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
LRRC40Q9H9A6 SLC25A24-204ENST00000569674 2357 ntBASIC20.85■□□□□ 0.93
LRRC40Q9H9A6 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC20.85■□□□□ 0.93
LRRC40Q9H9A6 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
LRRC40Q9H9A6 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LRRC40Q9H9A6 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LRRC40Q9H9A6 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
LRRC40Q9H9A6 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC20.84■□□□□ 0.93
LRRC40Q9H9A6 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC20.84■□□□□ 0.93
LRRC40Q9H9A6 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC20.84■□□□□ 0.93
LRRC40Q9H9A6 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
LRRC40Q9H9A6 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC20.84■□□□□ 0.93
LRRC40Q9H9A6 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
LRRC40Q9H9A6 AC091799.1-201ENST00000422823 811 ntBASIC20.84■□□□□ 0.93
LRRC40Q9H9A6 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC20.84■□□□□ 0.93
LRRC40Q9H9A6 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC20.84■□□□□ 0.93
LRRC40Q9H9A6 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC20.84■□□□□ 0.93
LRRC40Q9H9A6 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC20.84■□□□□ 0.93
LRRC40Q9H9A6 MYCNOS-205ENST00000641950 531 ntBASIC20.84■□□□□ 0.93
LRRC40Q9H9A6 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
LRRC40Q9H9A6 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC20.84■□□□□ 0.93
LRRC40Q9H9A6 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
LRRC40Q9H9A6 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LRRC40Q9H9A6 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LRRC40Q9H9A6 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
LRRC40Q9H9A6 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
LRRC40Q9H9A6 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
LRRC40Q9H9A6 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
LRRC40Q9H9A6 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC20.83■□□□□ 0.93
LRRC40Q9H9A6 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
LRRC40Q9H9A6 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
LRRC40Q9H9A6 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LRRC40Q9H9A6 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
LRRC40Q9H9A6 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
LRRC40Q9H9A6 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
LRRC40Q9H9A6 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC20.83■□□□□ 0.93
LRRC40Q9H9A6 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
LRRC40Q9H9A6 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC20.83■□□□□ 0.93
LRRC40Q9H9A6 CD44-222ENST00000526025 1052 ntTSL 2 BASIC20.83■□□□□ 0.93
LRRC40Q9H9A6 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC20.83■□□□□ 0.93
LRRC40Q9H9A6 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC20.83■□□□□ 0.93
LRRC40Q9H9A6 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
LRRC40Q9H9A6 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
LRRC40Q9H9A6 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC20.83■□□□□ 0.92
LRRC40Q9H9A6 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
LRRC40Q9H9A6 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
LRRC40Q9H9A6 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 86.3 ms