Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
SHROOM1Q2M3G4 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
SHROOM1Q2M3G4 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC24.15■■□□□ 1.46
SHROOM1Q2M3G4 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
SHROOM1Q2M3G4 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC24.15■■□□□ 1.46
SHROOM1Q2M3G4 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC24.15■■□□□ 1.46
SHROOM1Q2M3G4 AL359736.2-201ENST00000621992 437 ntBASIC24.15■■□□□ 1.46
SHROOM1Q2M3G4 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC24.15■■□□□ 1.46
SHROOM1Q2M3G4 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC24.15■■□□□ 1.46
SHROOM1Q2M3G4 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC24.15■■□□□ 1.46
SHROOM1Q2M3G4 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
SHROOM1Q2M3G4 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
SHROOM1Q2M3G4 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC24.15■■□□□ 1.46
SHROOM1Q2M3G4 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
SHROOM1Q2M3G4 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC24.14■■□□□ 1.46
SHROOM1Q2M3G4 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
SHROOM1Q2M3G4 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
SHROOM1Q2M3G4 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
SHROOM1Q2M3G4 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
SHROOM1Q2M3G4 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC24.14■■□□□ 1.45
SHROOM1Q2M3G4 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC24.14■■□□□ 1.45
SHROOM1Q2M3G4 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC24.14■■□□□ 1.45
SHROOM1Q2M3G4 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC24.14■■□□□ 1.45
SHROOM1Q2M3G4 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC24.13■■□□□ 1.45
SHROOM1Q2M3G4 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
SHROOM1Q2M3G4 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC24.13■■□□□ 1.45
SHROOM1Q2M3G4 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC24.13■■□□□ 1.45
SHROOM1Q2M3G4 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
SHROOM1Q2M3G4 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
SHROOM1Q2M3G4 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
SHROOM1Q2M3G4 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC24.13■■□□□ 1.45
SHROOM1Q2M3G4 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC24.13■■□□□ 1.45
SHROOM1Q2M3G4 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC24.13■■□□□ 1.45
SHROOM1Q2M3G4 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC24.13■■□□□ 1.45
SHROOM1Q2M3G4 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
SHROOM1Q2M3G4 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
SHROOM1Q2M3G4 USP36-216ENST00000589424 970 ntTSL 5 BASIC24.13■■□□□ 1.45
SHROOM1Q2M3G4 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC24.13■■□□□ 1.45
SHROOM1Q2M3G4 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
SHROOM1Q2M3G4 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC24.13■■□□□ 1.45
SHROOM1Q2M3G4 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
SHROOM1Q2M3G4 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC24.12■■□□□ 1.45
SHROOM1Q2M3G4 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
SHROOM1Q2M3G4 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
SHROOM1Q2M3G4 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC24.12■■□□□ 1.45
SHROOM1Q2M3G4 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
SHROOM1Q2M3G4 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
SHROOM1Q2M3G4 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC24.12■■□□□ 1.45
SHROOM1Q2M3G4 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC24.12■■□□□ 1.45
SHROOM1Q2M3G4 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC24.12■■□□□ 1.45
SHROOM1Q2M3G4 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC24.12■■□□□ 1.45
SHROOM1Q2M3G4 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC24.12■■□□□ 1.45
SHROOM1Q2M3G4 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC24.12■■□□□ 1.45
SHROOM1Q2M3G4 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC24.11■■□□□ 1.45
SHROOM1Q2M3G4 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
SHROOM1Q2M3G4 FBXW4P1-201ENST00000426721 2239 ntBASIC24.11■■□□□ 1.45
SHROOM1Q2M3G4 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
SHROOM1Q2M3G4 AC087633.2-202ENST00000565166 1439 ntBASIC24.11■■□□□ 1.45
SHROOM1Q2M3G4 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
SHROOM1Q2M3G4 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
SHROOM1Q2M3G4 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC24.11■■□□□ 1.45
SHROOM1Q2M3G4 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
SHROOM1Q2M3G4 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC24.11■■□□□ 1.45
SHROOM1Q2M3G4 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
SHROOM1Q2M3G4 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC24.11■■□□□ 1.45
SHROOM1Q2M3G4 C2orf69P4-201ENST00000565394 541 ntBASIC24.11■■□□□ 1.45
SHROOM1Q2M3G4 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC24.11■■□□□ 1.45
SHROOM1Q2M3G4 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC24.11■■□□□ 1.45
SHROOM1Q2M3G4 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
SHROOM1Q2M3G4 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
SHROOM1Q2M3G4 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC24.11■■□□□ 1.45
SHROOM1Q2M3G4 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC24.1■■□□□ 1.45
SHROOM1Q2M3G4 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
SHROOM1Q2M3G4 NXN-202ENST00000537628 1340 ntTSL 3 BASIC24.1■■□□□ 1.45
SHROOM1Q2M3G4 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
SHROOM1Q2M3G4 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
SHROOM1Q2M3G4 AL117328.2-201ENST00000624617 1940 ntBASIC24.1■■□□□ 1.45
SHROOM1Q2M3G4 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC24.1■■□□□ 1.45
SHROOM1Q2M3G4 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC24.1■■□□□ 1.45
SHROOM1Q2M3G4 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
SHROOM1Q2M3G4 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
SHROOM1Q2M3G4 REXO2-208ENST00000539754 791 ntTSL 2 BASIC24.1■■□□□ 1.45
SHROOM1Q2M3G4 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC24.1■■□□□ 1.45
SHROOM1Q2M3G4 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
SHROOM1Q2M3G4 CRK-204ENST00000574295 1391 ntTSL 5 BASIC24.1■■□□□ 1.45
SHROOM1Q2M3G4 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC24.1■■□□□ 1.45
SHROOM1Q2M3G4 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
SHROOM1Q2M3G4 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
SHROOM1Q2M3G4 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
SHROOM1Q2M3G4 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC24.1■■□□□ 1.45
SHROOM1Q2M3G4 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
SHROOM1Q2M3G4 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC24.1■■□□□ 1.45
SHROOM1Q2M3G4 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
SHROOM1Q2M3G4 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
SHROOM1Q2M3G4 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC24.1■■□□□ 1.45
SHROOM1Q2M3G4 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
SHROOM1Q2M3G4 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
SHROOM1Q2M3G4 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC24.09■■□□□ 1.45
SHROOM1Q2M3G4 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
SHROOM1Q2M3G4 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
Retrieved 100 of 98,524 protein–RNA pairs in 74.3 ms