Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PKNOX1P55347 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PKNOX1P55347 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PKNOX1P55347 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
PKNOX1P55347 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC20.12■□□□□ 0.81
PKNOX1P55347 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PKNOX1P55347 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
PKNOX1P55347 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
PKNOX1P55347 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
PKNOX1P55347 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC20.12■□□□□ 0.81
PKNOX1P55347 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
PKNOX1P55347 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
PKNOX1P55347 AC008175.2-201ENST00000612840 297 ntBASIC20.12■□□□□ 0.81
PKNOX1P55347 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
PKNOX1P55347 RALB-208ENST00000631312 311 ntTSL 5 BASIC20.12■□□□□ 0.81
PKNOX1P55347 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
PKNOX1P55347 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PKNOX1P55347 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC20.12■□□□□ 0.81
PKNOX1P55347 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
PKNOX1P55347 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PKNOX1P55347 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC20.12■□□□□ 0.81
PKNOX1P55347 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
PKNOX1P55347 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC20.12■□□□□ 0.81
PKNOX1P55347 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PKNOX1P55347 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
PKNOX1P55347 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC20.11■□□□□ 0.81
PKNOX1P55347 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
PKNOX1P55347 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PKNOX1P55347 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
PKNOX1P55347 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
PKNOX1P55347 RHOF-204ENST00000537265 699 ntTSL 2 BASIC20.11■□□□□ 0.81
PKNOX1P55347 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC20.11■□□□□ 0.81
PKNOX1P55347 AC142381.2-201ENST00000566120 298 ntBASIC20.11■□□□□ 0.81
PKNOX1P55347 AC011484.1-201ENST00000377652 1995 ntBASIC20.11■□□□□ 0.81
PKNOX1P55347 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
PKNOX1P55347 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC20.11■□□□□ 0.81
PKNOX1P55347 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
PKNOX1P55347 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC20.11■□□□□ 0.81
PKNOX1P55347 KRT87P-202ENST00000534226 1464 ntBASIC20.11■□□□□ 0.81
PKNOX1P55347 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PKNOX1P55347 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PKNOX1P55347 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
PKNOX1P55347 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
PKNOX1P55347 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC20.1■□□□□ 0.81
PKNOX1P55347 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PKNOX1P55347 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PKNOX1P55347 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
PKNOX1P55347 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
PKNOX1P55347 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
PKNOX1P55347 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PKNOX1P55347 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
PKNOX1P55347 NME4-202ENST00000382940 766 ntTSL 3 BASIC20.1■□□□□ 0.81
PKNOX1P55347 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC20.1■□□□□ 0.81
PKNOX1P55347 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
PKNOX1P55347 AC079140.4-201ENST00000507448 529 ntBASIC20.1■□□□□ 0.81
PKNOX1P55347 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
PKNOX1P55347 NME4-211ENST00000620944 1193 ntTSL 2 BASIC20.1■□□□□ 0.81
PKNOX1P55347 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PKNOX1P55347 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
PKNOX1P55347 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
PKNOX1P55347 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PKNOX1P55347 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC20.1■□□□□ 0.81
PKNOX1P55347 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC20.1■□□□□ 0.81
PKNOX1P55347 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
PKNOX1P55347 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PKNOX1P55347 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PKNOX1P55347 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PKNOX1P55347 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
PKNOX1P55347 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PKNOX1P55347 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC20.09■□□□□ 0.81
PKNOX1P55347 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC20.09■□□□□ 0.81
PKNOX1P55347 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC20.09■□□□□ 0.81
PKNOX1P55347 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC20.09■□□□□ 0.81
PKNOX1P55347 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
PKNOX1P55347 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
PKNOX1P55347 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
PKNOX1P55347 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
PKNOX1P55347 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PKNOX1P55347 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PKNOX1P55347 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC20.09■□□□□ 0.81
PKNOX1P55347 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC20.09■□□□□ 0.81
PKNOX1P55347 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
PKNOX1P55347 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
PKNOX1P55347 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC20.09■□□□□ 0.81
PKNOX1P55347 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
PKNOX1P55347 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PKNOX1P55347 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PKNOX1P55347 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
PKNOX1P55347 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC20.09■□□□□ 0.81
PKNOX1P55347 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PKNOX1P55347 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PKNOX1P55347 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PKNOX1P55347 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PKNOX1P55347 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
PKNOX1P55347 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC20.08■□□□□ 0.81
PKNOX1P55347 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC20.08■□□□□ 0.81
PKNOX1P55347 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
PKNOX1P55347 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
PKNOX1P55347 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC20.08■□□□□ 0.81
PKNOX1P55347 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms