Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 COX20-201ENST00000366528 568 ntTSL 2 BASIC19.6■□□□□ 0.73
SDC1P18827 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SDC1P18827 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SDC1P18827 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC19.6■□□□□ 0.73
SDC1P18827 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC19.6■□□□□ 0.73
SDC1P18827 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC19.6■□□□□ 0.73
SDC1P18827 RAB43-208ENST00000615093 783 ntTSL 5 BASIC19.6■□□□□ 0.73
SDC1P18827 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
SDC1P18827 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SDC1P18827 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SDC1P18827 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SDC1P18827 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC19.6■□□□□ 0.73
SDC1P18827 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SDC1P18827 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SDC1P18827 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC19.59■□□□□ 0.73
SDC1P18827 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
SDC1P18827 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SDC1P18827 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC19.59■□□□□ 0.73
SDC1P18827 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SDC1P18827 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC19.59■□□□□ 0.73
SDC1P18827 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
SDC1P18827 PTPA-214ENST00000423100 988 ntTSL 2 BASIC19.59■□□□□ 0.73
SDC1P18827 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC19.59■□□□□ 0.73
SDC1P18827 KRT18P14-201ENST00000534205 1250 ntBASIC19.59■□□□□ 0.73
SDC1P18827 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC19.59■□□□□ 0.73
SDC1P18827 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SDC1P18827 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC19.59■□□□□ 0.73
SDC1P18827 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SDC1P18827 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SDC1P18827 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC19.59■□□□□ 0.73
SDC1P18827 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC19.59■□□□□ 0.73
SDC1P18827 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
SDC1P18827 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SDC1P18827 AC004854.2-201ENST00000608450 1441 ntBASIC19.59■□□□□ 0.73
SDC1P18827 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SDC1P18827 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
SDC1P18827 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SDC1P18827 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC19.59■□□□□ 0.73
SDC1P18827 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
SDC1P18827 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC19.58■□□□□ 0.73
SDC1P18827 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
SDC1P18827 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC19.58■□□□□ 0.73
SDC1P18827 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
SDC1P18827 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SDC1P18827 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
SDC1P18827 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SDC1P18827 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
SDC1P18827 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC19.58■□□□□ 0.73
SDC1P18827 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
SDC1P18827 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SDC1P18827 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC19.58■□□□□ 0.72
SDC1P18827 TESC-206ENST00000541210 936 ntTSL 3 BASIC19.58■□□□□ 0.72
SDC1P18827 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SDC1P18827 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SDC1P18827 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SDC1P18827 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
SDC1P18827 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
SDC1P18827 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
SDC1P18827 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC19.58■□□□□ 0.72
SDC1P18827 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SDC1P18827 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
SDC1P18827 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC19.58■□□□□ 0.72
SDC1P18827 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
SDC1P18827 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
SDC1P18827 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
SDC1P18827 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC19.58■□□□□ 0.72
SDC1P18827 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SDC1P18827 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
SDC1P18827 AC116050.2-201ENST00000612102 1779 ntBASIC19.57■□□□□ 0.72
SDC1P18827 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
SDC1P18827 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SDC1P18827 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC19.57■□□□□ 0.72
SDC1P18827 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC19.57■□□□□ 0.72
SDC1P18827 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
SDC1P18827 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SDC1P18827 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
SDC1P18827 ZNRF2P3-201ENST00000424200 374 ntBASIC19.57■□□□□ 0.72
SDC1P18827 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC19.57■□□□□ 0.72
SDC1P18827 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SDC1P18827 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
SDC1P18827 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SDC1P18827 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.57■□□□□ 0.72
SDC1P18827 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
SDC1P18827 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
SDC1P18827 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SDC1P18827 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SDC1P18827 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SDC1P18827 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
SDC1P18827 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC19.56■□□□□ 0.72
SDC1P18827 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SDC1P18827 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SDC1P18827 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC19.56■□□□□ 0.72
SDC1P18827 KRT18P20-201ENST00000548986 1279 ntBASIC19.56■□□□□ 0.72
SDC1P18827 FGF8-207ENST00000618991 856 ntTSL 3 BASIC19.56■□□□□ 0.72
SDC1P18827 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC19.56■□□□□ 0.72
SDC1P18827 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC19.56■□□□□ 0.72
SDC1P18827 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC19.56■□□□□ 0.72
SDC1P18827 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SDC1P18827 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC19.56■□□□□ 0.72
SDC1P18827 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms