Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
APOEP02649 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC21.53■■□□□ 1.04
APOEP02649 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
APOEP02649 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
APOEP02649 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC21.52■■□□□ 1.04
APOEP02649 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC21.52■■□□□ 1.04
APOEP02649 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC21.52■■□□□ 1.04
APOEP02649 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
APOEP02649 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
APOEP02649 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC21.52■■□□□ 1.04
APOEP02649 PTPA-214ENST00000423100 988 ntTSL 2 BASIC21.52■■□□□ 1.04
APOEP02649 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC21.52■■□□□ 1.04
APOEP02649 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC21.52■■□□□ 1.04
APOEP02649 PLLP-204ENST00000569059 665 ntTSL 3 BASIC21.52■■□□□ 1.04
APOEP02649 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
APOEP02649 AC069236.1-201ENST00000604339 616 ntBASIC21.52■■□□□ 1.04
APOEP02649 AC008694.1-202ENST00000636953 945 ntBASIC21.52■■□□□ 1.04
APOEP02649 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
APOEP02649 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
APOEP02649 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
APOEP02649 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC21.52■■□□□ 1.03
APOEP02649 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC21.52■■□□□ 1.03
APOEP02649 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
APOEP02649 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
APOEP02649 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
APOEP02649 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
APOEP02649 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC21.51■■□□□ 1.03
APOEP02649 PBX1-209ENST00000485769 834 ntTSL 2 BASIC21.51■■□□□ 1.03
APOEP02649 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC21.51■■□□□ 1.03
APOEP02649 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC21.51■■□□□ 1.03
APOEP02649 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
APOEP02649 GXYLT1P5-201ENST00000614548 1189 ntBASIC21.51■■□□□ 1.03
APOEP02649 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
APOEP02649 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC21.51■■□□□ 1.03
APOEP02649 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
APOEP02649 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
APOEP02649 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC21.51■■□□□ 1.03
APOEP02649 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
APOEP02649 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
APOEP02649 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
APOEP02649 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
APOEP02649 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
APOEP02649 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
APOEP02649 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
APOEP02649 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
APOEP02649 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
APOEP02649 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
APOEP02649 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
APOEP02649 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
APOEP02649 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC21.5■■□□□ 1.03
APOEP02649 AL050303.2-201ENST00000619798 666 ntBASIC21.5■■□□□ 1.03
APOEP02649 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
APOEP02649 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
APOEP02649 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
APOEP02649 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC21.5■■□□□ 1.03
APOEP02649 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
APOEP02649 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
APOEP02649 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
APOEP02649 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
APOEP02649 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC21.49■■□□□ 1.03
APOEP02649 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC21.49■■□□□ 1.03
APOEP02649 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC21.49■■□□□ 1.03
APOEP02649 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC21.49■■□□□ 1.03
APOEP02649 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
APOEP02649 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
APOEP02649 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
APOEP02649 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
APOEP02649 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
APOEP02649 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
APOEP02649 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC21.48■■□□□ 1.03
APOEP02649 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
APOEP02649 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
APOEP02649 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC21.48■■□□□ 1.03
APOEP02649 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
APOEP02649 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
APOEP02649 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
APOEP02649 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC21.48■■□□□ 1.03
APOEP02649 AC007322.3-201ENST00000426526 701 ntBASIC21.48■■□□□ 1.03
APOEP02649 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC21.48■■□□□ 1.03
APOEP02649 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC21.48■■□□□ 1.03
APOEP02649 AL121832.2-201ENST00000610979 668 ntBASIC21.48■■□□□ 1.03
APOEP02649 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC21.48■■□□□ 1.03
APOEP02649 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
APOEP02649 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
APOEP02649 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
APOEP02649 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
APOEP02649 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
APOEP02649 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
APOEP02649 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC21.47■■□□□ 1.03
APOEP02649 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC21.47■■□□□ 1.03
APOEP02649 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
APOEP02649 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
APOEP02649 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC21.47■■□□□ 1.03
APOEP02649 NCF1B-203ENST00000435988 1254 ntBASIC21.47■■□□□ 1.03
APOEP02649 AF201337.1-201ENST00000520239 748 ntBASIC21.47■■□□□ 1.03
APOEP02649 AC133552.2-202ENST00000575694 574 ntBASIC21.47■■□□□ 1.03
APOEP02649 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
APOEP02649 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
APOEP02649 WT1-AS_3.1-201ENST00000613262 234 ntBASIC21.47■■□□□ 1.03
APOEP02649 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC21.47■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms