Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC24.95■■□□□ 1.58
COL1A1P02452 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC24.95■■□□□ 1.58
COL1A1P02452 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
COL1A1P02452 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC24.95■■□□□ 1.58
COL1A1P02452 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC24.95■■□□□ 1.58
COL1A1P02452 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC24.95■■□□□ 1.58
COL1A1P02452 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC24.95■■□□□ 1.58
COL1A1P02452 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
COL1A1P02452 RNF121-214ENST00000533380 870 ntTSL 3 BASIC24.95■■□□□ 1.58
COL1A1P02452 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC24.95■■□□□ 1.58
COL1A1P02452 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC24.94■■□□□ 1.58
COL1A1P02452 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
COL1A1P02452 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
COL1A1P02452 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC24.94■■□□□ 1.58
COL1A1P02452 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
COL1A1P02452 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC24.94■■□□□ 1.58
COL1A1P02452 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC24.94■■□□□ 1.58
COL1A1P02452 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC24.94■■□□□ 1.58
COL1A1P02452 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
COL1A1P02452 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
COL1A1P02452 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC24.94■■□□□ 1.58
COL1A1P02452 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
COL1A1P02452 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
COL1A1P02452 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
COL1A1P02452 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
COL1A1P02452 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC24.93■■□□□ 1.58
COL1A1P02452 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC24.93■■□□□ 1.58
COL1A1P02452 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
COL1A1P02452 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
COL1A1P02452 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC24.93■■□□□ 1.58
COL1A1P02452 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
COL1A1P02452 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
COL1A1P02452 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC24.93■■□□□ 1.58
COL1A1P02452 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC24.93■■□□□ 1.58
COL1A1P02452 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC24.93■■□□□ 1.58
COL1A1P02452 PNMA6B-201ENST00000538162 1200 ntBASIC24.93■■□□□ 1.58
COL1A1P02452 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
COL1A1P02452 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC24.93■■□□□ 1.58
COL1A1P02452 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC24.93■■□□□ 1.58
COL1A1P02452 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC24.93■■□□□ 1.58
COL1A1P02452 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC24.92■■□□□ 1.58
COL1A1P02452 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
COL1A1P02452 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
COL1A1P02452 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
COL1A1P02452 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
COL1A1P02452 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC24.92■■□□□ 1.58
COL1A1P02452 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
COL1A1P02452 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC24.92■■□□□ 1.58
COL1A1P02452 MME-217ENST00000616757 1315 ntTSL 5 BASIC24.92■■□□□ 1.58
COL1A1P02452 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC24.92■■□□□ 1.58
COL1A1P02452 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
COL1A1P02452 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
COL1A1P02452 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC24.92■■□□□ 1.58
COL1A1P02452 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC24.92■■□□□ 1.58
COL1A1P02452 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC24.92■■□□□ 1.58
COL1A1P02452 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC24.92■■□□□ 1.58
COL1A1P02452 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC24.91■■□□□ 1.58
COL1A1P02452 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC24.91■■□□□ 1.58
COL1A1P02452 PEX7-202ENST00000367756 680 ntTSL 3 BASIC24.91■■□□□ 1.58
COL1A1P02452 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
COL1A1P02452 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC24.91■■□□□ 1.58
COL1A1P02452 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC24.91■■□□□ 1.58
COL1A1P02452 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC24.91■■□□□ 1.58
COL1A1P02452 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC24.91■■□□□ 1.58
COL1A1P02452 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
COL1A1P02452 PARN-205ENST00000539279 1557 ntTSL 2 BASIC24.91■■□□□ 1.58
COL1A1P02452 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
COL1A1P02452 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC24.91■■□□□ 1.58
COL1A1P02452 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
COL1A1P02452 STK25-234ENST00000535007 2459 ntTSL 2 BASIC24.91■■□□□ 1.58
COL1A1P02452 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
COL1A1P02452 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC24.91■■□□□ 1.58
COL1A1P02452 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC24.91■■□□□ 1.58
COL1A1P02452 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC24.91■■□□□ 1.58
COL1A1P02452 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
COL1A1P02452 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC24.9■■□□□ 1.58
COL1A1P02452 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
COL1A1P02452 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
COL1A1P02452 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC24.9■■□□□ 1.58
COL1A1P02452 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC24.9■■□□□ 1.58
COL1A1P02452 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC24.9■■□□□ 1.58
COL1A1P02452 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC24.9■■□□□ 1.58
COL1A1P02452 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC24.9■■□□□ 1.58
COL1A1P02452 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC24.9■■□□□ 1.58
COL1A1P02452 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC24.9■■□□□ 1.58
COL1A1P02452 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
COL1A1P02452 AL024507.2-201ENST00000606070 2574 ntBASIC24.9■■□□□ 1.58
COL1A1P02452 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC24.9■■□□□ 1.58
COL1A1P02452 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
COL1A1P02452 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC24.89■■□□□ 1.58
COL1A1P02452 MIR718-201ENST00000390190 70 ntBASIC24.89■■□□□ 1.58
COL1A1P02452 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC24.89■■□□□ 1.58
COL1A1P02452 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC24.89■■□□□ 1.58
COL1A1P02452 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
COL1A1P02452 AC233263.1-201ENST00000578059 224 ntBASIC24.89■■□□□ 1.58
COL1A1P02452 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC24.89■■□□□ 1.58
COL1A1P02452 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC24.89■■□□□ 1.58
COL1A1P02452 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC24.89■■□□□ 1.58
COL1A1P02452 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC24.89■■□□□ 1.57
COL1A1P02452 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.57
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms