Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HOXC11O43248 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HOXC11O43248 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC21.03■□□□□ 0.96
HOXC11O43248 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC21.03■□□□□ 0.96
HOXC11O43248 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
HOXC11O43248 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
HOXC11O43248 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HOXC11O43248 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HOXC11O43248 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
HOXC11O43248 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
HOXC11O43248 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
HOXC11O43248 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HOXC11O43248 C2orf69P4-201ENST00000565394 541 ntBASIC21.03■□□□□ 0.96
HOXC11O43248 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC21.03■□□□□ 0.96
HOXC11O43248 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
HOXC11O43248 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HOXC11O43248 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC21.03■□□□□ 0.96
HOXC11O43248 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC21.03■□□□□ 0.96
HOXC11O43248 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC21.03■□□□□ 0.96
HOXC11O43248 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
HOXC11O43248 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
HOXC11O43248 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
HOXC11O43248 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
HOXC11O43248 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
HOXC11O43248 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
HOXC11O43248 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
HOXC11O43248 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.96
HOXC11O43248 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
HOXC11O43248 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC21.02■□□□□ 0.96
HOXC11O43248 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
HOXC11O43248 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
HOXC11O43248 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
HOXC11O43248 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
HOXC11O43248 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
HOXC11O43248 SLC29A4P2-201ENST00000504749 1089 ntBASIC21.02■□□□□ 0.96
HOXC11O43248 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC21.02■□□□□ 0.96
HOXC11O43248 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
HOXC11O43248 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
HOXC11O43248 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC21.02■□□□□ 0.96
HOXC11O43248 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
HOXC11O43248 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
HOXC11O43248 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
HOXC11O43248 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.95
HOXC11O43248 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HOXC11O43248 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HOXC11O43248 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HOXC11O43248 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HOXC11O43248 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HOXC11O43248 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
HOXC11O43248 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC21.01■□□□□ 0.95
HOXC11O43248 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC21.01■□□□□ 0.95
HOXC11O43248 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HOXC11O43248 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
HOXC11O43248 AC142381.4-202ENST00000563973 229 ntBASIC21.01■□□□□ 0.95
HOXC11O43248 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
HOXC11O43248 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC21.01■□□□□ 0.95
HOXC11O43248 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HOXC11O43248 AC244015.2-201ENST00000616358 1861 ntBASIC21.01■□□□□ 0.95
HOXC11O43248 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC21■□□□□ 0.95
HOXC11O43248 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC21■□□□□ 0.95
HOXC11O43248 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC21■□□□□ 0.95
HOXC11O43248 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC21■□□□□ 0.95
HOXC11O43248 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HOXC11O43248 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
HOXC11O43248 DYM-203ENST00000442713 2147 ntTSL 2 BASIC21■□□□□ 0.95
HOXC11O43248 AL158047.1-201ENST00000445918 881 ntBASIC21■□□□□ 0.95
HOXC11O43248 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC21■□□□□ 0.95
HOXC11O43248 OR2A1-AS1-207ENST00000486094 819 ntBASIC21■□□□□ 0.95
HOXC11O43248 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC21■□□□□ 0.95
HOXC11O43248 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC21■□□□□ 0.95
HOXC11O43248 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HOXC11O43248 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HOXC11O43248 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC21■□□□□ 0.95
HOXC11O43248 PARN-205ENST00000539279 1557 ntTSL 2 BASIC21■□□□□ 0.95
HOXC11O43248 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
HOXC11O43248 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC21■□□□□ 0.95
HOXC11O43248 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HOXC11O43248 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
HOXC11O43248 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
HOXC11O43248 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HOXC11O43248 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
HOXC11O43248 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HOXC11O43248 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HOXC11O43248 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HOXC11O43248 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HOXC11O43248 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC20.99■□□□□ 0.95
HOXC11O43248 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HOXC11O43248 REXO2-208ENST00000539754 791 ntTSL 2 BASIC20.99■□□□□ 0.95
HOXC11O43248 SOX15-203ENST00000570788 1093 ntBASIC20.99■□□□□ 0.95
HOXC11O43248 AP006294.2-201ENST00000641667 209 ntBASIC20.99■□□□□ 0.95
HOXC11O43248 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
HOXC11O43248 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC20.99■□□□□ 0.95
HOXC11O43248 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
HOXC11O43248 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC20.99■□□□□ 0.95
HOXC11O43248 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HOXC11O43248 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
HOXC11O43248 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
HOXC11O43248 AL117328.2-201ENST00000624617 1940 ntBASIC20.98■□□□□ 0.95
HOXC11O43248 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HOXC11O43248 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC20.98■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms