Protein–RNA interactions for Protein: Q9Y6M4

CSNK1G3, Casein kinase I isoform gamma-3, humanhuman

Predictions only

Length 447 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSNK1G3Q9Y6M4 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CSNK1G3Q9Y6M4 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CSNK1G3Q9Y6M4 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.21■□□□□ 0.83
CSNK1G3Q9Y6M4 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC20.21■□□□□ 0.83
CSNK1G3Q9Y6M4 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC20.21■□□□□ 0.83
CSNK1G3Q9Y6M4 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CSNK1G3Q9Y6M4 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CSNK1G3Q9Y6M4 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC20.2■□□□□ 0.82
CSNK1G3Q9Y6M4 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
CSNK1G3Q9Y6M4 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CSNK1G3Q9Y6M4 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
CSNK1G3Q9Y6M4 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
CSNK1G3Q9Y6M4 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CSNK1G3Q9Y6M4 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC20.2■□□□□ 0.82
CSNK1G3Q9Y6M4 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC20.2■□□□□ 0.82
CSNK1G3Q9Y6M4 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CSNK1G3Q9Y6M4 AC142381.4-202ENST00000563973 229 ntBASIC20.2■□□□□ 0.82
CSNK1G3Q9Y6M4 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC20.2■□□□□ 0.82
CSNK1G3Q9Y6M4 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC20.2■□□□□ 0.82
CSNK1G3Q9Y6M4 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CSNK1G3Q9Y6M4 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC20.2■□□□□ 0.82
CSNK1G3Q9Y6M4 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC20.2■□□□□ 0.82
CSNK1G3Q9Y6M4 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CSNK1G3Q9Y6M4 NXN-202ENST00000537628 1340 ntTSL 3 BASIC20.2■□□□□ 0.82
CSNK1G3Q9Y6M4 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CSNK1G3Q9Y6M4 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CSNK1G3Q9Y6M4 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CSNK1G3Q9Y6M4 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC20.19■□□□□ 0.82
CSNK1G3Q9Y6M4 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CSNK1G3Q9Y6M4 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC20.19■□□□□ 0.82
CSNK1G3Q9Y6M4 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CSNK1G3Q9Y6M4 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC20.19■□□□□ 0.82
CSNK1G3Q9Y6M4 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC20.19■□□□□ 0.82
CSNK1G3Q9Y6M4 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CSNK1G3Q9Y6M4 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CSNK1G3Q9Y6M4 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC20.19■□□□□ 0.82
CSNK1G3Q9Y6M4 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CSNK1G3Q9Y6M4 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
CSNK1G3Q9Y6M4 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CSNK1G3Q9Y6M4 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
CSNK1G3Q9Y6M4 CYP21A1P-202ENST00000354927 1481 ntBASIC20.18■□□□□ 0.82
CSNK1G3Q9Y6M4 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CSNK1G3Q9Y6M4 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC20.18■□□□□ 0.82
CSNK1G3Q9Y6M4 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CSNK1G3Q9Y6M4 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CSNK1G3Q9Y6M4 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC20.18■□□□□ 0.82
CSNK1G3Q9Y6M4 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC20.18■□□□□ 0.82
CSNK1G3Q9Y6M4 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CSNK1G3Q9Y6M4 BAALC-201ENST00000297574 801 ntTSL 3 BASIC20.18■□□□□ 0.82
CSNK1G3Q9Y6M4 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CSNK1G3Q9Y6M4 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CSNK1G3Q9Y6M4 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CSNK1G3Q9Y6M4 AC073648.6-201ENST00000641589 218 ntBASIC20.18■□□□□ 0.82
CSNK1G3Q9Y6M4 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CSNK1G3Q9Y6M4 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CSNK1G3Q9Y6M4 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CSNK1G3Q9Y6M4 AC116050.2-201ENST00000612102 1779 ntBASIC20.18■□□□□ 0.82
CSNK1G3Q9Y6M4 AL024507.2-201ENST00000606070 2574 ntBASIC20.18■□□□□ 0.82
CSNK1G3Q9Y6M4 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC20.18■□□□□ 0.82
CSNK1G3Q9Y6M4 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
CSNK1G3Q9Y6M4 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
CSNK1G3Q9Y6M4 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC20.17■□□□□ 0.82
CSNK1G3Q9Y6M4 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CSNK1G3Q9Y6M4 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CSNK1G3Q9Y6M4 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CSNK1G3Q9Y6M4 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC20.17■□□□□ 0.82
CSNK1G3Q9Y6M4 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CSNK1G3Q9Y6M4 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CSNK1G3Q9Y6M4 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CSNK1G3Q9Y6M4 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CSNK1G3Q9Y6M4 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC20.17■□□□□ 0.82
CSNK1G3Q9Y6M4 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC20.17■□□□□ 0.82
CSNK1G3Q9Y6M4 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CSNK1G3Q9Y6M4 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
CSNK1G3Q9Y6M4 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CSNK1G3Q9Y6M4 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC20.16■□□□□ 0.82
CSNK1G3Q9Y6M4 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CSNK1G3Q9Y6M4 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC20.16■□□□□ 0.82
CSNK1G3Q9Y6M4 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC20.16■□□□□ 0.82
CSNK1G3Q9Y6M4 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
CSNK1G3Q9Y6M4 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC20.16■□□□□ 0.82
CSNK1G3Q9Y6M4 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC20.16■□□□□ 0.82
CSNK1G3Q9Y6M4 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CSNK1G3Q9Y6M4 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CSNK1G3Q9Y6M4 AC242852.2-201ENST00000615738 1807 ntBASIC20.16■□□□□ 0.82
CSNK1G3Q9Y6M4 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CSNK1G3Q9Y6M4 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC20.16■□□□□ 0.82
CSNK1G3Q9Y6M4 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CSNK1G3Q9Y6M4 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CSNK1G3Q9Y6M4 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC20.16■□□□□ 0.82
CSNK1G3Q9Y6M4 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CSNK1G3Q9Y6M4 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC20.16■□□□□ 0.82
CSNK1G3Q9Y6M4 AL158047.1-201ENST00000445918 881 ntBASIC20.16■□□□□ 0.82
CSNK1G3Q9Y6M4 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
CSNK1G3Q9Y6M4 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CSNK1G3Q9Y6M4 PNMA6B-201ENST00000538162 1200 ntBASIC20.16■□□□□ 0.82
CSNK1G3Q9Y6M4 AC008403.3-201ENST00000598924 454 ntBASIC20.16■□□□□ 0.82
CSNK1G3Q9Y6M4 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC20.16■□□□□ 0.82
CSNK1G3Q9Y6M4 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
CSNK1G3Q9Y6M4 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms