Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 C1QBPP2-201ENST00000528754 825 ntBASIC23.21■■□□□ 1.31
VTA1Q9NP79 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC23.21■■□□□ 1.31
VTA1Q9NP79 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC23.21■■□□□ 1.31
VTA1Q9NP79 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
VTA1Q9NP79 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC23.21■■□□□ 1.31
VTA1Q9NP79 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC23.21■■□□□ 1.31
VTA1Q9NP79 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
VTA1Q9NP79 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
VTA1Q9NP79 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
VTA1Q9NP79 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
VTA1Q9NP79 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
VTA1Q9NP79 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
VTA1Q9NP79 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC23.2■■□□□ 1.3
VTA1Q9NP79 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
VTA1Q9NP79 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
VTA1Q9NP79 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC23.2■■□□□ 1.3
VTA1Q9NP79 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC23.2■■□□□ 1.3
VTA1Q9NP79 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC23.2■■□□□ 1.3
VTA1Q9NP79 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
VTA1Q9NP79 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC23.2■■□□□ 1.3
VTA1Q9NP79 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC23.2■■□□□ 1.3
VTA1Q9NP79 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC23.2■■□□□ 1.3
VTA1Q9NP79 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC23.2■■□□□ 1.3
VTA1Q9NP79 PGM5P4-201ENST00000421970 445 ntBASIC23.2■■□□□ 1.3
VTA1Q9NP79 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC23.2■■□□□ 1.3
VTA1Q9NP79 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC23.2■■□□□ 1.3
VTA1Q9NP79 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC23.2■■□□□ 1.3
VTA1Q9NP79 AC069544.1-201ENST00000609399 999 ntBASIC23.2■■□□□ 1.3
VTA1Q9NP79 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
VTA1Q9NP79 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC23.2■■□□□ 1.3
VTA1Q9NP79 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC23.2■■□□□ 1.3
VTA1Q9NP79 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC23.19■■□□□ 1.3
VTA1Q9NP79 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC23.19■■□□□ 1.3
VTA1Q9NP79 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
VTA1Q9NP79 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC23.19■■□□□ 1.3
VTA1Q9NP79 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
VTA1Q9NP79 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC23.19■■□□□ 1.3
VTA1Q9NP79 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC23.19■■□□□ 1.3
VTA1Q9NP79 AC233263.1-201ENST00000578059 224 ntBASIC23.19■■□□□ 1.3
VTA1Q9NP79 FAM197Y4-202ENST00000622692 608 ntBASIC23.19■■□□□ 1.3
VTA1Q9NP79 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
VTA1Q9NP79 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC23.19■■□□□ 1.3
VTA1Q9NP79 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
VTA1Q9NP79 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
VTA1Q9NP79 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
VTA1Q9NP79 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC23.18■■□□□ 1.3
VTA1Q9NP79 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC23.18■■□□□ 1.3
VTA1Q9NP79 POM121L13P-201ENST00000422362 380 ntBASIC23.18■■□□□ 1.3
VTA1Q9NP79 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC23.18■■□□□ 1.3
VTA1Q9NP79 ARL16-209ENST00000573715 763 ntTSL 3 BASIC23.18■■□□□ 1.3
VTA1Q9NP79 ARL16-211ENST00000576135 694 ntTSL 3 BASIC23.18■■□□□ 1.3
VTA1Q9NP79 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
VTA1Q9NP79 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC23.18■■□□□ 1.3
VTA1Q9NP79 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
VTA1Q9NP79 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
VTA1Q9NP79 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC23.18■■□□□ 1.3
VTA1Q9NP79 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
VTA1Q9NP79 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC23.18■■□□□ 1.3
VTA1Q9NP79 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
VTA1Q9NP79 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC23.17■■□□□ 1.3
VTA1Q9NP79 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
VTA1Q9NP79 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
VTA1Q9NP79 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC23.17■■□□□ 1.3
VTA1Q9NP79 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC23.17■■□□□ 1.3
VTA1Q9NP79 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
VTA1Q9NP79 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
VTA1Q9NP79 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC23.17■■□□□ 1.3
VTA1Q9NP79 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
VTA1Q9NP79 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
VTA1Q9NP79 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
VTA1Q9NP79 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
VTA1Q9NP79 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC23.17■■□□□ 1.3
VTA1Q9NP79 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
VTA1Q9NP79 EXOC3-AS1-202ENST00000623673 1663 ntBASIC23.16■■□□□ 1.3
VTA1Q9NP79 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC23.16■■□□□ 1.3
VTA1Q9NP79 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC23.16■■□□□ 1.3
VTA1Q9NP79 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
VTA1Q9NP79 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC23.16■■□□□ 1.3
VTA1Q9NP79 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
VTA1Q9NP79 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC23.16■■□□□ 1.3
VTA1Q9NP79 KLF2-202ENST00000592003 564 ntTSL 3 BASIC23.16■■□□□ 1.3
VTA1Q9NP79 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC23.16■■□□□ 1.3
VTA1Q9NP79 AC233723.2-201ENST00000623798 2106 ntBASIC23.16■■□□□ 1.3
VTA1Q9NP79 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC23.16■■□□□ 1.3
VTA1Q9NP79 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
VTA1Q9NP79 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC23.16■■□□□ 1.3
VTA1Q9NP79 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
VTA1Q9NP79 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC23.16■■□□□ 1.3
VTA1Q9NP79 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
VTA1Q9NP79 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
VTA1Q9NP79 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC23.16■■□□□ 1.3
VTA1Q9NP79 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC23.15■■□□□ 1.3
VTA1Q9NP79 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC23.15■■□□□ 1.3
VTA1Q9NP79 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
VTA1Q9NP79 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
VTA1Q9NP79 MIR718-201ENST00000390190 70 ntBASIC23.15■■□□□ 1.3
VTA1Q9NP79 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC23.15■■□□□ 1.3
VTA1Q9NP79 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC23.15■■□□□ 1.3
VTA1Q9NP79 BRWD1-AS2-201ENST00000603064 1028 ntBASIC23.15■■□□□ 1.3
VTA1Q9NP79 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC23.15■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms